Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g01710 ATGTCTTATGAAAATATTTGCTGCTATAGTGGAAGCCATTCTTCAGAGGTGCCATTGGTCGAGAACATCCTCAAACCTCTCGAAGGAATCAAAGAGGTTGTAGTCATCATGCCATCAAGAACGGTCATCGTTGTTCATGGCAGTTTTGTCATTTCCCAACGTCAAATTGTTAAGGCTCTCAATCAAGCAGGATTAGAAGCGAATATTAGAGTGTATGGGAGCGAAAAGCACAGAAAGAGATTGCCAGGTCCTTACTCAGTTGCTTCTGGTTTGCTACTTTTGCTTTCGTTTTCTCAGGTTTGTGTATTCTCCCTTGCACTGGCTGAACATTGTGGTGGCACCATGGAGCTCATGTGCATGCAGGCATATGCTCCCGCAACACCGGCAGCACCAAAGGACCTCTTAACCCTAACCTCGTCAACCCCACAAGAGGGAGCGAGTGAATTCCAGATCGCAAAGAAGAAGGAGCCTGAAACGAAACATCACAGAAGAAGGATGATGGAACCTGCTTTGACTTGTTGTGGTCATTTGTTTCGTTGGTCGTGCCTATATCGATGGCTGCACCTGCATTCCGAAGCTAAGGAACGTCCGGTTTGCAAGGGAGAGGTGACTCTTAAGAGTGTTACCACAACATATGGCCGTGGAAACAATGTTCGTGGTCCTGAGGAGGATTCCGCTCTTAAAATCGCTACTAGGCCGCAAGCAAGGCGTGTTGAGAGCCTGAGACAAACCATTCAGAGAAATGCATTTGCACTCCCTGTGGAAGAGATGATTCGCCGTCTTGGAAGCGGAATTGATCTTTCTAGGGATATAGTTCAGCCATATCGTTGCATGCCGTGCTGGCCCTGCAGGAAGCTGCTGAAGCTTACCTTGTTGCACTCGGTTTCAAACTACAAACCTTTCCAACTCCTTGTCCATACCGAGCCACACCCCCTCCTTCACGAGCAGGAGTTAGATTTTTCCAGAATATAG 972 0.4743 MSYENICCYSGSHSSEVPLVENILKPLEGIKEVVVIMPSRTVIVVHGSFVISQRQIVKALNQAGLEANIRVYGSEKHRKRLPGPYSVASGLLLLLSFSQVCVFSLALAEHCGGTMELMCMQAYAPATPAAPKDLLTLTSSTPQEGASEFQIAKKKEPETKHHRRRMMEPALTCCGHLFRWSCLYRWLHLHSEAKERPVCKGEVTLKSVTTTYGRGNNVRGPEEDSALKIATRPQARRVESLRQTIQRNAFALPVEEMIRRLGSGIDLSRDIVQPYRCMPCWPCRKLLKLTLLHSVSNYKPFQLLVHTEPHPLLHEQELDFSRI* 324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g01710 323 SUPERFAMILY RING/U-box 165 210 - -
Rops3g01710 323 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 168 246 IPR045103 GO:0005783|GO:0006511|GO:0061630
Rops3g01710 323 MobiDBLite consensus disorder prediction 142 163 - -
Rops3g01710 323 Gene3D - 7 71 - -
Rops3g01710 323 MobiDBLite consensus disorder prediction 149 163 - -
Rops3g01710 323 SUPERFAMILY HMA, heavy metal-associated domain 14 68 IPR036163 GO:0046872
Rops3g01710 323 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 166 211 IPR013083 -
Rops3g01710 323 FunFam Putative cadmium/zinc-transporting ATPase 3 4 71 - -
Rops3g01710 323 ProSiteProfiles Heavy-metal-associated domain profile. 1 68 IPR006121 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g01710 Rops-Chr3 28446683 28447719 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops3g01710 168 266 C3H Transcription Factor Family AT3G58030 61.616 2.11e-34 128
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g01710 K10666 - gmx:100811099 194.897