Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g01700 ATGCAGATTCAGCCTTGGCAGAATTCTCGATTTCCCTTGCTTCCTTGGCGGCTAGGGTTTCAACCTCTTAACCCTAAAACCGCAAGGCCCATGAACGTTTCACGTTGCAAGGAAAACCTAAATGTCGCCGCCAACACTTGGCCCCTTGAGGCCAAGAAGCAGCGGATAAGAATAGTCATTGCTACCATTACAATTTCAGGGATGTTTTTAATTGGTTTTCTTATCTACCTTCTCCGGCGCAACGCAACTGAGAATTCAGAAATTATAGAGCAAGAAGGTGACAGAGGAGGTAGTGAAGATGATCTTGATCTCCCATTGCTTGACCATTCAGAAATAGTCACTGCTACTGATAACTTCTCCTTAAAGAACAAGATTGGAGAAGGAGGTTTTGGACCTGTATACAAGGGAAGATTAGTAAGTGGACAAGAAGTTGCTGTGAAGAAGCTGTCAAGAAGCTCTGGACAAGGAATGACTGAGTTCAAGAATGAAGTAAAACTGATAGCAAAACTTCAGCACCGAAATCTTGTTAAGCTTCTTGGTTGTTGCATTCAGGAGGAAGATAGAATGCTGGTTTATGAATACATGCCTAACCGTAGTTTGAATTGGTTGATTTTTGATGATGCTAAAAGCAAATTGCTAGATTGGCCTAAGCGCTTCGACATTATCTGTGGAATTGCTAGAGGTCTTCTCTATCTTCATCAAGATTCTAGATTGAGGATAATTCATAGAGACCTCAAACCAAGTAATATTTTGCTTGATGAAAAGCTGAACCCGAAAATATCAGATTTTGGTATTGCTAGAATTTTTGGATTAGATCAGACTGAAGGAAATACAAAGCGAGTGGTTGGAACTTATGGCTACATGGCACCAGAATATGCTGTTGATGGGCTTTTCTCTATGAAATCTGACGTTTTCAGTTTTGGAATTTTGTTGCTGGAGATCATAACTGGAAAGAAAAATAGAGGTTTTTATCTTGAAAATGACTCTCCAAACCTTGTCACTCATGCATGGAGTTTGTGGAAAGAGGGCAGGGCTTTAGAACTGATTTACCAAAACATAGAGGACTCTTGTGTTCTATCAGAGGTATTGCGTTGCTTCCAAGTTGGTCTCTTGTGTGTGCAGCAATACCCAGAGGATAGGCCTGTAATGCCTTCAGTGGTTCTAATGTTGGTTAGTGAGAGTGAATTGGCTGAGCCCAAAGAGCCTGGTTACTATGTAAAGAAGGATTCATGTGCTAAAACTTCCAATAGTGATAAGATCTCAACCAATGAAATAACCATCACCTTATTAGAAGCACGATGA 1302 0.4063 MQIQPWQNSRFPLLPWRLGFQPLNPKTARPMNVSRCKENLNVAANTWPLEAKKQRIRIVIATITISGMFLIGFLIYLLRRNATENSEIIEQEGDRGGSEDDLDLPLLDHSEIVTATDNFSLKNKIGEGGFGPVYKGRLVSGQEVAVKKLSRSSGQGMTEFKNEVKLIAKLQHRNLVKLLGCCIQEEDRMLVYEYMPNRSLNWLIFDDAKSKLLDWPKRFDIICGIARGLLYLHQDSRLRIIHRDLKPSNILLDEKLNPKISDFGIARIFGLDQTEGNTKRVVGTYGYMAPEYAVDGLFSMKSDVFSFGILLLEIITGKKNRGFYLENDSPNLVTHAWSLWKEGRALELIYQNIEDSCVLSEVLRCFQVGLLCVQQYPEDRPVMPSVVLMLVSESELAEPKEPGYYVKKDSCAKTSNSDKISTNEITITLLEAR* 434
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g01700 433 Gene3D Transferase(Phosphotransferase) domain 1 195 409 - -
Rops3g01700 433 CDD STKc_IRAK 125 390 - -
Rops3g01700 433 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 195 398 - -
Rops3g01700 433 ProSiteProfiles Protein kinase domain profile. 119 396 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops3g01700 433 SUPERFAMILY Protein kinase-like (PK-like) 105 390 IPR011009 -
Rops3g01700 433 Gene3D Phosphorylase Kinase; domain 1 88 194 - -
Rops3g01700 433 Pfam Domain of unknown function (DUF3403) 393 433 IPR021820 GO:0004674
Rops3g01700 433 ProSitePatterns Serine/Threonine protein kinases active-site signature. 240 252 IPR008271 GO:0004672|GO:0006468
Rops3g01700 433 Pfam Protein kinase domain 120 319 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops3g01700 433 SMART serkin_6 119 397 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops3g01700 433 FunFam receptor-like serine/threonine-protein kinase SD1-8 90 194 - -
Rops3g01700 433 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 36 433 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g01700 Rops-Chr3 28133315 28140566 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops3g01700 59 408 Receptor kinase-like Gene Family AT4G23230 54.545 7.92e-134 397
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Rops3g01700 Pkinase 1.7e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g01700 - - gmx:100775648 585.874