Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g01699 ATGAGACAAGCAGGTGCATACTCAGGTTTACTCTGTGGTGGCATTTCAGGAAGAACAGGGCCTCACTCTTTGCCATTGGCAAGGATCAAGAAGATCATGAAGAACTGTGGTGATGATGTGAAGATGGTATCTGGTGAAGCTCCCATTGTTTTCTCCAAGGCTTGTGAGTTGTTCATTGAGGAACTAGCCAAAAGGTCATGGAATATAACCCTCCAAGGCAAAAGGAGAACTTTGCACAAAGAGGACGTGGCCTCTGCTGTTATAGCCACTGATCTCTTCGACTTCTTGGTTACTTTGGTTTCCAATTCCGACAGTGGCAACAACCCCGTGGAAGAGATGAAATACTCTTTATAA 354 0.4492 MRQAGAYSGLLCGGISGRTGPHSLPLARIKKIMKNCGDDVKMVSGEAPIVFSKACELFIEELAKRSWNITLQGKRRTLHKEDVASAVIATDLFDFLVTLVSNSDSGNNPVEEMKYSL* 118
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g01699 117 SUPERFAMILY Histone-fold 16 96 IPR009072 GO:0046982
Rops3g01699 117 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 22 105 - -
Rops3g01699 117 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 23 87 IPR003958 -
Rops3g01699 117 Gene3D Histone, subunit A 15 102 IPR009072 GO:0046982
Rops3g01699 117 FunFam Nuclear transcription factor Y subunit C 14 102 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g01699 Rops-Chr3 28127699 28128052 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops3g01699 22 104 CCAAT-HAP5 Transcription Factor Family AT1G54830 63.855 1.26e-33 114
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YC Rops3g01699 CBFD_NFYB_HMF 7.9e-20 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g01699 - - jcu:105646052 188.734