Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g01693 ATGGCAGATGATCAGTTTCAAGCAAGTGCAAACTGGTGGGAATCAGGGAGAAACATGAGGTTTGAAAGTGCGGAATCACAGTCTTCATCTTCTGGACTCACAAACATAGGCAACTTTGGTGGTTGGCAACAACAGCAACAACATCATGATACCATGTCTGCTTCAGGTAGTTCCTCTGTGGTTTTCCATGATACCCAGAAGCTTCAACCTCAGGATTCTACTACCACTTCCAGCAATGACCCCAACTTGCATATGATGGGTTTGGGACTTTCATCAAGAACCATGGATTGGAATCAAGCATCTTTGCTACGAGGTGAGAAGGCTTCAGAGGGGAGTTTCAGGTCGATGCTGCAAGAGAATTTGAACTCATCAAGCACCAATTTTCAGCAAGAAACTGGTGGGGTTGGTTTGCCTCAAGTTCATTGGAGACCAGAAAAGTTGTTCTCTGCAGAATCTTCTAGCAATGAATTCAAGCAAGTGAATAGGGGTTTCTCTTTGGATCAAACCCAGTTTAGTCCTCAATATAGCTCAGGGGATAGCGCTGTCACAACCCAAGGTTTGCCTTGTACTTTTCAGATGGATTCTTCAGCTTTATATGGGAACTCTTCAATATTACAAGGACTTTTAGGATCTGAAAGTAATCAAACTCAACAAGGTTCATTTGAGAATCGTCCCATGAATTTTCCATACTCAACAAGCTTTGGCTTGAACTCCAATGAGTTAATGCCTTCTTGGTCTAAAGTTCCTCAGTTCTTGAGAGCTTCACCTCCAAAACAACAACAACAACAACCACCCAATAACCAGTTGCATTTCACCAACAATGCTCCCTTTTGGAATGCTTCAGAGGCTACTATTAAGGATACTCGATCCAGCTTCTTCCCTTCAATGCAACCACGATTTCTCACACCAAATTTTGATGCACAATCAAAGAATATATCTGAAGTTAGGGACTCAAGTGCTGCAGTGAAGAAAAGTGGGAGTGAACCAGCACCTAAAAGGCCAAGGAATGAAACCCCATCACCTATGCCAGCTTTTAAGGTGAGAAAAGAGAAGATGGGGGACAGAATCACTGCACTTCAACAATTGGTTTCACCTTTCGGAAAGACTGATACAGCTTCGGTGCTCTCTGAAGCCATTGAATATATCAAATTCCTCCATGAACAAGTGACAGTTTTAAGCACCCCATATATGAAAAGCGGTGCTCCAATACAGCATCAACAGAGTTCTGGTAAATCTAAGGAAGGTGAGGGTCCAAAACAAGAACTTAGAAGCCGAGGGCTATGCTTGGTGCCAGTTTCTAGCACATTCCCAGTGACTCATGAACCAACAATTGAATATTGGACACCAACATTCGGAGGAACTTACAGATAA 1371 0.4282 MADDQFQASANWWESGRNMRFESAESQSSSSGLTNIGNFGGWQQQQQHHDTMSASGSSSVVFHDTQKLQPQDSTTTSSNDPNLHMMGLGLSSRTMDWNQASLLRGEKASEGSFRSMLQENLNSSSTNFQQETGGVGLPQVHWRPEKLFSAESSSNEFKQVNRGFSLDQTQFSPQYSSGDSAVTTQGLPCTFQMDSSALYGNSSILQGLLGSESNQTQQGSFENRPMNFPYSTSFGLNSNELMPSWSKVPQFLRASPPKQQQQQPPNNQLHFTNNAPFWNASEATIKDTRSSFFPSMQPRFLTPNFDAQSKNISEVRDSSAAVKKSGSEPAPKRPRNETPSPMPAFKVRKEKMGDRITALQQLVSPFGKTDTASVLSEAIEYIKFLHEQVTVLSTPYMKSGAPIQHQQSSGKSKEGEGPKQELRSRGLCLVPVSSTFPVTHEPTIEYWTPTFGGTYR* 457
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g01693 456 CDD bHLH_AtbHLH_like 342 393 IPR045239 -
Rops3g01693 456 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 336 385 IPR011598 GO:0046983
Rops3g01693 456 MobiDBLite consensus disorder prediction 400 424 - -
Rops3g01693 456 MobiDBLite consensus disorder prediction 21 85 - -
Rops3g01693 456 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 124 437 - -
Rops3g01693 456 MobiDBLite consensus disorder prediction 313 344 - -
Rops3g01693 456 MobiDBLite consensus disorder prediction 21 88 - -
Rops3g01693 456 FunFam Transcription factor bHLH123 family 346 408 - -
Rops3g01693 456 SMART finulus 347 391 IPR011598 GO:0046983
Rops3g01693 456 Gene3D - 346 407 IPR036638 GO:0046983
Rops3g01693 456 MobiDBLite consensus disorder prediction 253 273 - -
Rops3g01693 456 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 346 403 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g01693 Rops-Chr3 27965284 27968121 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops3g01693 104 456 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G20640 46.547 8.89e-81 253
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g01693 - - gmx:100818424 659.833