Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g01672 ATGCTCATGGAGATCCTTCGAAGGGAGAAGCAATTAAACATTACATTGGATCCATATATTGATGCTTTAGTGAAGGTTCCTTGTACCTTTGAGAACACTAGGGATTTCGATGAGACCGTTTGCAAGCCCAATGATGAAGAGAGCAATTTCTGGGAGGCATTGCAGCGTGTTGTATCTAGAATGCAAGATCTTGAACTTTCCATGCATTTTGATTCTGTTTTCGCTTCGTGTTCTTTCATTGAAGCTTGCAAAGGTTTTCTTTCTACTTTGCCTGCTCCTTTGGGATCTCCTTTTCAAGTGATGTTGGCACTTGACTCTGAGATGTGCATAACAAGTGAGGGTTTTGAGCTGACAAGAATTACTCTAGTGGATGTTGAAGGACAGATATTTCAATTTGGACTGGAGGCAGTTGAGAAAAGGTTGGCCATAATCTCTCAGAAATTTAGCATCCCAGTTGAGTTCCATGGTGTGCCTGTTTTTGCTCCAGACGTGACTAGAGACATGCTTGATGTCAGGCCTGGAGAGGCTTTGGCTGTGAACTTTCCTCTACTACTTCACCATACTGCTGATGAGAGTGTTGATATGAGTAATCCAAGGGATGGACTTCTAAGATTGGTAAAATCACTTTCTCCCAAGGTAGTAACATTGGTGGAGCAGGAATCAAACACCAATACAACTCCTCTCTTCAACAGGTTTATAGAAACCTTGGATTACTACTTGGCAGTGTTTGAGTCCATTGATGTCACTCTCCCAAGGAAGAGCAAGGAACGAATTAATGTGGAGCAACATTGTTTGGCTAGGGATATTGTCAACATTATTGCTTGTGAAGGGAAGGAAAGAGTAGAGAGACATGAACTATTTGGCAAGTGGAAGTCTAGGTTCACAATGGCTGGCTTCCAACAATACCCTTTAAGTTCTTATGTGAATTCTGTTATAAGAAGCTTGCTGAGGTGCTATTCAGAACATTATAGTCTTGTGGAGAAGGATGGGGCCATGTTGTTGGGATGGAAAAACAGAAATTTGATATCAGCTTCAGCCTGGCATTGA 1047 0.4183 MLMEILRREKQLNITLDPYIDALVKVPCTFENTRDFDETVCKPNDEESNFWEALQRVVSRMQDLELSMHFDSVFASCSFIEACKGFLSTLPAPLGSPFQVMLALDSEMCITSEGFELTRITLVDVEGQIFQFGLEAVEKRLAIISQKFSIPVEFHGVPVFAPDVTRDMLDVRPGEALAVNFPLLLHHTADESVDMSNPRDGLLRLVKSLSPKVVTLVEQESNTNTTPLFNRFIETLDYYLAVFESIDVTLPRKSKERINVEQHCLARDIVNIIACEGKERVERHELFGKWKSRFTMAGFQQYPLSSYVNSVIRSLLRCYSEHYSLVEKDGAMLLGWKNRNLISASAWH* 349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g01672 348 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 114 344 IPR005202 -
Rops3g01672 348 Pfam GRAS domain family 116 347 IPR005202 -
Rops3g01672 348 ProSiteProfiles GRAS family profile. 1 348 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g01672 Rops-Chr3 26856811 26865280 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops3g01672 119 347 GRAS Transcription Factor Family AT1G50600 62.338 2.85e-96 294
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Rops3g01672 GRAS 1.9e-74 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g01672 - - gmx:100775665 408.683