LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Rops3g01665	ATGGACTCAAAGCAGTTTTTTAGTTTCAGTGTGACCAATTCAGCAGGAATACCTTACACAACATCTTATCCTACTATTCCATCAATACCAAACCGGAAGCTTGGATCCTTGAAACTTGACCCAGGAAGCTCACCTAATTCAGCCCTTTCTACTCATTTTGATTCTGATACTCTTTCTGCATTGAGTAGCCAGGATCAGCACAGCTCTGGGGAAAGCAATCATAATTTACACCGGCCAGTCTTATCTGTGGACCATATCCAAAACAGTTTGCATCTATCTGGTAGAAGCTCTCTTCCACAGGATGCAAGTTGTGACCTGGAAACCAAACATGCATTGCTGGAACTAGAAACTGCTTTGATGGCACATGATGGTGATGATGAAATTACCACATCAAATACTTCTTTGGGTGATGGTAGCAGGCCAACCACATCCGGCCAAAGAAATAGGTCCTGGAGCCTCCAGCACCAGGGTTCAGAATATATTCAAAGTGAAGTTGCACATGTAGAGAAACGTCACAAATCAATGGAGGAATCATCACCACAAGGCTTCCCATCAAGCAATTTGAAACAATTACTGATTGTATGCGCCAAAGCACTGTCTGACAACAGCATGAAAGATTTTGATCAATTGATAGAAAAGGCTAAAAGTGCTGTGTCTATTACTGGGGAGCCAATACAGCGGCTTGGTGCTTATTTGGTAGAAGGGCTTGTTGCAAGGAAGGAGGCATCAGGGAATAACTTCTATCGCGCCCTTAGATGCAGAGAGCCTGAGGGCAAAGACTTAATCTCTTACATGCAGTTATTGTATGATATCTGCCCATACTTAAAATTTGGTTACATGGCTGCCAATGGTGCTATTGCTGAAGCTTGCAGAAATGAGGATCGCATTCACATCATAGACTTTCAAATTGCTGAGGGAACTCAATGGATGACTCTCCTTCAAGCTCTTGGAGCAAGACCTGGTGGTGCTCCACATGTTCGGATCACGGGGATTGATGATCCTGTTTCTAGATATGCTCGTGGTGGTGATGGACTGGAGGCAGTTGAGAAAAGGTTGGCCATAATCTCTCAGAAATTTAGCATCCCAGTTGAGTTCCATGGTGTGCCTGTTTTTGCTCCAGATGTGACTAGAGACATGCTTGATGTCAGGCCAGGAGAGGCTTTGGCTGTGAACTTTCCTCTACTACTTCACCATACTGCTGATGAGAGTGTTGATATGAGTAATCCAAGGGATGGACTTCTAAGATTGGTAAAATCACTTTCTCCCAAGGTAGTAACATTGGTGGAGCAGGAATCAAACACCAATACAACTCCTCTCTTCAACAGGTTTATAGAAACCTTGGATTACTACTTGGCAGTGTTTGAGTCCATTGATGTCACTCTCCCAAGGAAGAGCAAGGAACGAATTAATGTGGAGCAACATTGTTTGGCTAGGGATATTGTCAACATTATTGCTTGTGAAGGGAAGGAAAGAGTAGAGAGACATGAACTATTTGGCAAGTGGAAGTCTAGGTTCACAATGGCTGGCTTCCAACAATACCCTTTAAGTTCTTATGTGAATTCTGTTATAAGAAGCTTGCTGAGGTGCTATTCAGAACATTATAGTCTTGTGGAGAAGGATGGGGCCATGTTGTTGGGATGGAAAAACAGAAATTTGATATCAGCTTCAGCCTGGCTTTGA	1680	0.4321	MDSKQFFSFSVTNSAGIPYTTSYPTIPSIPNRKLGSLKLDPGSSPNSALSTHFDSDTLSALSSQDQHSSGESNHNLHRPVLSVDHIQNSLHLSGRSSLPQDASCDLETKHALLELETALMAHDGDDEITTSNTSLGDGSRPTTSGQRNRSWSLQHQGSEYIQSEVAHVEKRHKSMEESSPQGFPSSNLKQLLIVCAKALSDNSMKDFDQLIEKAKSAVSITGEPIQRLGAYLVEGLVARKEASGNNFYRALRCREPEGKDLISYMQLLYDICPYLKFGYMAANGAIAEACRNEDRIHIIDFQIAEGTQWMTLLQALGARPGGAPHVRITGIDDPVSRYARGGDGLEAVEKRLAIISQKFSIPVEFHGVPVFAPDVTRDMLDVRPGEALAVNFPLLLHHTADESVDMSNPRDGLLRLVKSLSPKVVTLVEQESNTNTTPLFNRFIETLDYYLAVFESIDVTLPRKSKERINVEQHCLARDIVNIIACEGKERVERHELFGKWKSRFTMAGFQQYPLSSYVNSVIRSLLRCYSEHYSLVEKDGAMLLGWKNRNLISASAWL*	560

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Rops3g01665	559	MobiDBLite	consensus disorder prediction	126	156	-	-
	Rops3g01665	559	ProSiteProfiles	GRAS family profile.	179	559	IPR005202	-
	Rops3g01665	559	MobiDBLite	consensus disorder prediction	123	156	-	-
	Rops3g01665	559	Pfam	GRAS domain family	188	558	IPR005202	-
	Rops3g01665	559	MobiDBLite	consensus disorder prediction	56	76	-	-
	Rops3g01665	559	PANTHER	OSJNBA0084A10.13 PROTEIN-RELATED	158	555	IPR005202	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Rops3g01665	Rops-Chr3	26072863	26076392	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Rops3g01665	109	558	GRAS Transcription Factor Family	AT5G48150	55.211	3.61e-172	494

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	GRAS	Rops3g01665		GRAS	4.2e-124	CL0063

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Rops3g01665	-		-	gmx:100775665	900.968