Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g01660 ATGCCAACAGTGTGGTTCTCTTTGAAGAGGTCTTTACACTGCAAATCAGAACCATCTGATGTTCATGACCCAAAATCAAGGAAGCATTTGAGCACAATCTTGACCAAAAGAGCAGGAAGATCAGGTTGTTCAAGGTCCATAGCAAATCTAAAAGATGTCATCCATGGAAGCAAGAGGCATCTTGATAAGCCACCAAGTTGCAGTCCAAGATCCATAGGTAGCAGTGAGTTTCTCAACCCCATAACCCATGAAGTGATTTTAAGCAACTCAAGGTGTGAGCTGAAAATCACTGGATATGGAGGGTTCCAAGATGGGGTTGGTAGTGGTGGTGGAAGTGGTAACAATGCTAGTGGTGGTTCAACTTTTGTGGGTACTTTGAGACCTGGGACCCCTGGTCCTGGAGGGCATCCCACAATGCATTACTTTAACCCCTCTTTTAGGACTTCATCCACTCCTCCAAGGAAATCTCCTTTCCTTTTATCAGATAAAGAAGGGTCTGGTCTTCATGGTGCTGGACTTCATTCAAGCAATAGAATGTCCCTTGAGACAGATTCTAATGGGTCTTCAACTGTGACTTGCCACAAATGTGGAGAGCAATTTAACAAATGGGAAGCTGCTGAAGCTCATCATCTATCCAAGCATGCTGTTACTGAACTTGTGGAAGGTGATTCATCAAGGAAAATAGTGGAGATCATATGTAGGACTAGCTGGTTAAAGTCTGAAAACCAATGTGGTAGAATTGAGAGAGTTTTGAAGGTCCACAACATGCAAAAGACTCTGGCTAGATTTGAAGAGTACAGGGAGATGGTGAAAATCAAAGCCAGCAAACTCCAGAAGAAGCATCCAAGGTGCCTGGCTGATGGAAATGAGCTTTTGAGGTTCTATGGCACTACTGTTGCTTGCTCTTTTGGTCTAAATGGTTCTTCCAGTCTTTGTCTATCAGAAAAATGTTGTGTTTGTAGAATTATCAGGAATGGTTTTTCTGCCAAGAAGGAGCTCAAGGAAGGCATAGGTGTTTTCACAACATCAACAAGTGGAAGAGCTTTTGAATCTATAGAGATTCTTGGTAATGAACCATCACTAAGAAAAGCACTTATAGTTTGCAGAGTAATTGCTGGAAGGGTTCATAGGCCACTGGAGAATATTCAGGAAATGGCAGCTCAGACAGGGTTTGACTCATTGGCTGGGAAAGTTGGTCTTTATTCAAATATTGAGGAGCTTTATTTGCTCAATCCTAGAGCTCTTCTTCCTTGCTTTGTGGTAATTTGCAAACCATGA 1278 0.4241 MPTVWFSLKRSLHCKSEPSDVHDPKSRKHLSTILTKRAGRSGCSRSIANLKDVIHGSKRHLDKPPSCSPRSIGSSEFLNPITHEVILSNSRCELKITGYGGFQDGVGSGGGSGNNASGGSTFVGTLRPGTPGPGGHPTMHYFNPSFRTSSTPPRKSPFLLSDKEGSGLHGAGLHSSNRMSLETDSNGSSTVTCHKCGEQFNKWEAAEAHHLSKHAVTELVEGDSSRKIVEIICRTSWLKSENQCGRIERVLKVHNMQKTLARFEEYREMVKIKASKLQKKHPRCLADGNELLRFYGTTVACSFGLNGSSSLCLSEKCCVCRIIRNGFSAKKELKEGIGVFTTSTSGRAFESIEILGNEPSLRKALIVCRVIAGRVHRPLENIQEMAAQTGFDSLAGKVGLYSNIEELYLLNPRALLPCFVVICKP* 426
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g01660 425 SUPERFAMILY ADP-ribosylation 216 424 - -
Rops3g01660 425 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 4 423 - -
Rops3g01660 425 Gene3D - 216 424 - -
Rops3g01660 425 MobiDBLite consensus disorder prediction 144 186 - -
Rops3g01660 425 ProSitePatterns Zinc finger C2H2 type domain signature. 193 214 IPR013087 -
Rops3g01660 425 FunFam C2H2-like zinc finger protein 215 424 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g01660 Rops-Chr3 25983575 25986142 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops3g01660 1 425 C2H2 Transcription Factor Family AT5G54630 68.467 0.0 592
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Rops3g01660 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g01660 - - gmx:100787790 778.089
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops3g01660 3 25983575 25986142 Rops3g01660 3 25983575 25986142 ECH