Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g01656 ATGGTTTCCCGGGAAAATACCAATTGGCTTTTCGATTATGGCTTGATCGATGATATTCCTGTCTCCGATGCTACCTTCACTGTTCCTTCCTCTGGGTTCACTTGGCCCTCGCAACCCTTGAATGCTTCTTCGAATGACGGTGTTGAAATTGATGGCTCATTAGGGGATTCTGACAGTCTCAAAGAGTCGGGTTCAAAGAAGAGGGTTAGATCTGAGTCATGTGCTGCTTCTAGCTCCAAGGCATGTCGGGAGAAGTTGCGTAGAGATAGGCTTAATGACAAGTTTGTTGAATTGGGCTCCATTTTGGAGCCCGGAAGGCCTACCAAAACAGACAAGGCTGCTATCCTGATTGATGCTGTCCGAATGGTGACACAGTTACGGGGTGAAGCCCAGAAGTTGAAAGACACTAATATGGGTCTTCAAGAAAAGATTAAAGAGTTAAAGGCTGAGAAGAATGAACTTCGCGATGAGAAACAGAGGCTGAAGGCAGAGAAAGAGAAGTTAGAGCAGCAGCTGAAATCTATGAATGCACAACCTAGTTTCTTGCCTGCTCCAGCTGCACTCCCTGCTGCATTTGCTGCACAAGGCCAAGCCCATGGCAACAAGTTGGTACCTTTCATCAGTTATCCAGGAGTTGCAATGTGGCAATTTATGCCACCTGCTGCAGTGGATACTTCACAGGATCACGTACTTCGTCCACCAGTTGCCTAA 711 0.4698 MVSRENTNWLFDYGLIDDIPVSDATFTVPSSGFTWPSQPLNASSNDGVEIDGSLGDSDSLKESGSKKRVRSESCAASSSKACREKLRRDRLNDKFVELGSILEPGRPTKTDKAAILIDAVRMVTQLRGEAQKLKDTNMGLQEKIKELKAEKNELRDEKQRLKAEKEKLEQQLKSMNAQPSFLPAPAALPAAFAAQGQAHGNKLVPFISYPGVAMWQFMPPAAVDTSQDHVLRPPVA* 237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g01656 236 SMART finulus 81 132 IPR011598 GO:0046983
Rops3g01656 236 FunFam Transcription factor bHLH34 66 124 - -
Rops3g01656 236 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 75 126 IPR011598 GO:0046983
Rops3g01656 236 Pfam Helix-loop-helix DNA-binding domain 79 126 IPR011598 GO:0046983
Rops3g01656 236 CDD bHLH_AtILR3_like 80 155 - -
Rops3g01656 236 Coils Coil 123 178 - -
Rops3g01656 236 Gene3D - 78 155 IPR036638 GO:0046983
Rops3g01656 236 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 77 145 IPR036638 GO:0046983
Rops3g01656 236 MobiDBLite consensus disorder prediction 36 50 - -
Rops3g01656 236 PANTHER BHLH TRANSCRIPTION FACTOR 3 236 IPR044818 GO:0003700|GO:0006355|GO:0006879|GO:0046983
Rops3g01656 236 MobiDBLite consensus disorder prediction 36 72 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g01656 Rops-Chr3 25916902 25921470 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops3g01656 1 236 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G54680 73.222 2.73e-120 340
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Rops3g01656 HLH 3.4e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g01656 - - gmx:100788858 389.808
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops3g01656 3 25916902 25921470 Rops3g01656 3 25916902 25921470 ECH
Rops7g01161 7 15505863 15509525 Rops3g01656 3 25916902 25921470 PCT