Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g01648 ATGGGGAACAATAGCATGTTTCGTTATGCAGATGGAACTGATAAGTTGTTGATGTTCTTTGGGACTCTTGGAAGCCTTGGAGATGGGCTGCAAAACCCTCTCATGATGTACATTCTTAGTGATGTGATCAATGCCTATGGAGACAAGAATAGCATTTTGACAAAGCATGATGTGAACAAGTATGCATTGAGGCTTTTATATGTTGCACTTGGAGTTGGACTTTCAGCTTTTATTGAAGGAACATGTTGGACAAGAACAGCTGAGAGACAGGCTTCTAGAATGAGAATGGAATACTTAAAATCAGTCCTAAGACAAGAAGTTGGTTTCTTTGACACCCAGACCGATGGTTCTTCAACAACCTACCAAGTTGTCTCACTCATCTCCTCAGATGCAAATACAATCCAAGTTGCCTTGTGTGAGAAGATACCTGACTGCCTGGCTTACCTGTCAACATTCTTATTCTGCCACATCTTTGCATTTGTACTCTCATGGAAACTCGCATTGGCAGCCATACCACTCTCTGTCATGTTCATTGTTCCAGCACTTATATTTGGGAAGATCATGTTGGATGTCACAATGAAAATGATTGAGTCTTATGGGGTTGCTGGTGGGATTGCAGAACAGGCAATATCTTCAATAAGAACTGTTTATTCTTATGTTGGGGAGAATCAAACATTAAACAGATTCAGCAGTGCACTTCAAAAAACTATGGAATTTGGAGTAAAGCAAGGTTTTGCTAAGGGGTTGATGTTAGGAAGTATGGGAGTTATTTATATAAGTTGGGGTTTCCAGGCATGGGTTGGAACTTATCTGATCACTGAAAAAGGAGAACAAGGTGGCCATGTATTTGTAGCTGGCTTCAATGTCCTCATGGGAGGGCTGAGCATTTTGAGTGCCCTTCCAAATTTAACTGCCATCACAGAAGCAACTGCTGCTGTCACTCGTCTTTTTGAAATGATTGATCGGGTGCCAGCTATAGATTCTGAAGAGAAGAAAGGAAAGGCTTTATCATATGTGAGAGGAGAAATTGAATTCAAAGACATCTACTTCTGTTACCCATCTAGGCCAGATTCACCAGTCTTGCGGGAATTCAATCTCACTATTCCAGCAGGCAAGAGGGTAGGCCTTGTTGGGGGTAGTGGTTCAGGTAAATCCACTGTAATTGCACTGCTTGAAAGGTTTTATGACCCTGTTGAGGGAGAAATACTCTTGGATGGCCACAAGATTAATAGACTTCAATTGAAATGGTTGAGATCTCATCTTGGCCTTGTAAATCAAGAACCTGTTCTTTTTGCCACCTCCATAAAAGAGAATATATTGTTTGGAAAAGAAGGGGCTTCGATGGAAAGTGTGATAACTGCAGCTAAAGCAGCAAATGCACATGATTTCATTGTCAAGTTACCAGATGGATATGAAACTCAGGTTGGGCAGTTTGGATTTCAATTGTCTGGTGGACAGAAGCAGAGGATTGCCATAGCAAGAGCATTACTCAGGGATCCCAAGGTTCTCCTACTTGATGAAGCAACCAGTGCACTGGATGCTCAATCTGAAAGAGTGGTACAGGCAGCAATTGATCAAGCTTCAAAAGGAAGGACAACAATCATCATTGCTCACCGCTTGTCTACAATAAGAACAGCTCACATGATTGCAGTCCTTCAAGCAGGGAGAGTGGTTGAATTAGGTACTCATAATGAGCTCATGGAATTGAATGATGGACAAGGTGGGGAGTATGCTCGAATGGTAGAGTTACAGCAAGTAACAACTCAGAATGATGAATCCAAACATTCCAATCTTCAAACAGAAGGAAAGAGCTCCCACAGGATGAGCATTCCCCAAAGTCCAGGAGTGAGTTTCAAATCAAGCACACAAGGGACTCCAATGTTGTATCCCTTTAGCCAGGGATTTTCCATGGGCACACCTTACTCCTACTCTATCCAATATGACCTTGATGATGATAGTTTTGATGATAACTTGAAAAGATCAAATTATCCAGCTCCTTCACAGTGGCGTTTGATGAAAATGAATGCACCTGAGTGGGGTAGAGCAGTGTTAGGAATCTTGGGAGCAATAGGCTCAGGAGCAGTACAACCTGTGAATGCATACTGTGTAGGATTACTCATATCAGTTTATTTTGACACTGATAGCTCTGAGATGAAGTCTAAAACTAGAGTCCTGGCCCTTGTTTTCTTAGGAATTGGTGTTTTTAACTTTTTCACTAGTATTCTCCAGCACTACAATTTTGCAGTTATGGGAGAAAGGTTGACTAAAAGAATAAGAGAGAAAATACTAGAGAAGTTGATGACATTTGAGATAGGATGGTTTGATAATGAAGAGAACACAAGTGCATCCATTTGTGCAAGATTAGCCTCTGAAGCCAACTTGGTTCGTTCCCTTGTTGGGGACAGAATGTCTTTGTTGGCTCAAGCAGTTTTTGGCTCTGTCTTTGCTTACACTCTAGGTCTTGTGCTCACATGGAGGCTTTCTCTTGTGATGATTGCAGTGCAGCCATTAGTCATTGGAAGCTTTTATTCAAGAAGTGTCTTGATGAAGGGTATGGCAGAAAAAGCTAGAAAAGCACAAAGGGAAGGAAGCCAACTTGCAAGTGAAGCTGTTATAAACCATAGAACCATAACAGCCTTCAGTTCTCAGAAAAGAATGTTGGCACTCTTCAAATCCACAATGGTGGGACCTAAAACGGAGAGTATTAGGCAATCATGGATTTCAGGCTTTGGTCTTTTCAGCTCCCAATTTTTCAACACTGCATCAACAGCATTGGCTTATTGGTATGGTGGGAAGCTCCTAATAGATGGGCTCATAGAACCACAGCATTTGTTCCAAGCATTTTTAATATTGCTTTTCACTGCATACATCATTGCAGAAGCTGGAAGCATGACTTCTGATTTATCTAAAGGAAGCAGTGCAGTTGGATCAGTTTTTGCAATCTTGGATAGGAAAAGTGAGATTGATCCTGAAACTTCATGGGGAGCAGATAAAAAAAGGAAAATAAGGGGTAGAGTGGAGCTTAAAAGTGTATACTTTGCATATCCAACTAGACCTGACCAAATGATATTCCAAGGTCTGAATCTTAAAGTTGAGGCTGGGAGAACAGTAGCACTAGTTGGGCACAGTGGTTGTGGTAAATCAACTATTATTGGTCTTATTGAAAGGTTTTATGATCCTGTCAAGGGAACAATATGCATAGATGAACAAGACATCAAGTCCTATAATTTGAGAATTCTGAGGTCACATATTGCTTTGGTAAGTCAGGAACCAACCCTTTTTAGTGGAACCATTCGAGAAAACATTGCCTATGGGAAAGAAAATGCAACTGAATCTGAGATCAGAAGAGCTGCAACTCTGGCTAATGCTCATGAATTCATAAGTGGAATGAATGAAGGGTATGAAACAAACTGTGGAGAAAGAGGAGTTCAACTTTCAGGAGGTCAGAAACAAAGAATAGCCTTAGCTCGGGCCATACTGAAGAATCCTTCAATTCTTCTTCTGGATGAGGCTACAAGTGCACTTGATAGTGTATCTGAGATTTTGGTCCAAGAAGCACTTGAGAAGATAATGGTTGGAAGAACATGCATAGCAGTAGCACACAGGCTATCTACAATACAGAAATCCAACTCCATTGCTGTGATTAAGAATGGGAAGGTTGTGGAACAAGGTTCACATAATGAATTGTTTTCCCTTGGACGTAATGGAGCATACTATTCTCTTGTTAAACTTCAAAGTGGTAGCTCCCCTAGGTGA 3756 0.4111 MGNNSMFRYADGTDKLLMFFGTLGSLGDGLQNPLMMYILSDVINAYGDKNSILTKHDVNKYALRLLYVALGVGLSAFIEGTCWTRTAERQASRMRMEYLKSVLRQEVGFFDTQTDGSSTTYQVVSLISSDANTIQVALCEKIPDCLAYLSTFLFCHIFAFVLSWKLALAAIPLSVMFIVPALIFGKIMLDVTMKMIESYGVAGGIAEQAISSIRTVYSYVGENQTLNRFSSALQKTMEFGVKQGFAKGLMLGSMGVIYISWGFQAWVGTYLITEKGEQGGHVFVAGFNVLMGGLSILSALPNLTAITEATAAVTRLFEMIDRVPAIDSEEKKGKALSYVRGEIEFKDIYFCYPSRPDSPVLREFNLTIPAGKRVGLVGGSGSGKSTVIALLERFYDPVEGEILLDGHKINRLQLKWLRSHLGLVNQEPVLFATSIKENILFGKEGASMESVITAAKAANAHDFIVKLPDGYETQVGQFGFQLSGGQKQRIAIARALLRDPKVLLLDEATSALDAQSERVVQAAIDQASKGRTTIIIAHRLSTIRTAHMIAVLQAGRVVELGTHNELMELNDGQGGEYARMVELQQVTTQNDESKHSNLQTEGKSSHRMSIPQSPGVSFKSSTQGTPMLYPFSQGFSMGTPYSYSIQYDLDDDSFDDNLKRSNYPAPSQWRLMKMNAPEWGRAVLGILGAIGSGAVQPVNAYCVGLLISVYFDTDSSEMKSKTRVLALVFLGIGVFNFFTSILQHYNFAVMGERLTKRIREKILEKLMTFEIGWFDNEENTSASICARLASEANLVRSLVGDRMSLLAQAVFGSVFAYTLGLVLTWRLSLVMIAVQPLVIGSFYSRSVLMKGMAEKARKAQREGSQLASEAVINHRTITAFSSQKRMLALFKSTMVGPKTESIRQSWISGFGLFSSQFFNTASTALAYWYGGKLLIDGLIEPQHLFQAFLILLFTAYIIAEAGSMTSDLSKGSSAVGSVFAILDRKSEIDPETSWGADKKRKIRGRVELKSVYFAYPTRPDQMIFQGLNLKVEAGRTVALVGHSGCGKSTIIGLIERFYDPVKGTICIDEQDIKSYNLRILRSHIALVSQEPTLFSGTIRENIAYGKENATESEIRRAATLANAHEFISGMNEGYETNCGERGVQLSGGQKQRIALARAILKNPSILLLDEATSALDSVSEILVQEALEKIMVGRTCIAVAHRLSTIQKSNSIAVIKNGKVVEQGSHNELFSLGRNGAYYSLVKLQSGSSPR* 1252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g01648 1251 Gene3D ABC transporter type 1, transmembrane domain 5 602 IPR036640 GO:0005524|GO:0016020
Rops3g01648 1251 CDD ABC_6TM_Pgp_ABCB1_D2_like 672 988 - -
Rops3g01648 1251 Pfam ABC transporter transmembrane region 18 293 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Rops3g01648 1251 Pfam ABC transporter transmembrane region 684 955 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Rops3g01648 1251 CDD ABC_MTABC3_MDL1_MDL2 343 584 - -
Rops3g01648 1251 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 343 579 IPR003439 GO:0005524
Rops3g01648 1251 SMART AAA_5 1033 1225 IPR003593 GO:0016887
Rops3g01648 1251 SMART AAA_5 370 562 IPR003593 GO:0016887
Rops3g01648 1251 FunFam ABC transporter B family member 19 333 585 - -
Rops3g01648 1251 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 683 970 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Rops3g01648 1251 MobiDBLite consensus disorder prediction 587 621 - -
Rops3g01648 1251 SUPERFAMILY ABC transporter transmembrane region 7 327 IPR036640 GO:0005524|GO:0016020
Rops3g01648 1251 Gene3D - 996 1249 IPR027417 -
Rops3g01648 1251 Pfam ABC transporter 361 510 IPR003439 GO:0005524
Rops3g01648 1251 ProSitePatterns ABC transporters family signature. 482 496 IPR017871 GO:0005524|GO:0016887
Rops3g01648 1251 FunFam ABC transporter B family member 4 996 1249 - -
Rops3g01648 1251 Gene3D - 333 585 IPR027417 -
Rops3g01648 1251 ProSitePatterns ABC transporters family signature. 1145 1159 IPR017871 GO:0005524|GO:0016887
Rops3g01648 1251 Pfam ABC transporter 1025 1173 IPR003439 GO:0005524
Rops3g01648 1251 Gene3D ABC transporter type 1, transmembrane domain 644 994 IPR036640 GO:0005524|GO:0016020
Rops3g01648 1251 SUPERFAMILY ABC transporter transmembrane region 669 989 IPR036640 GO:0005524|GO:0016020
Rops3g01648 1251 CDD ABC_MTABC3_MDL1_MDL2 1006 1245 - -
Rops3g01648 1251 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1001 1245 IPR027417 -
Rops3g01648 1251 CDD ABC_6TM_Pgp_ABCB1_D1_like 18 316 - -
Rops3g01648 1251 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1006 1242 IPR003439 GO:0005524
Rops3g01648 1251 MobiDBLite consensus disorder prediction 602 621 - -
Rops3g01648 1251 FunFam Putative ABC transporter B family member 8 647 993 - -
Rops3g01648 1251 FunFam ABC transporter B family member 15-like 6 340 - -
Rops3g01648 1251 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 334 584 IPR027417 -
Rops3g01648 1251 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 19 308 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Rops3g01648 1251 PANTHER ABC TRANSPORTER B FAMILY 5 740 IPR039421 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g01648 Rops-Chr3 25641297 25647771 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops3g01648 4 587 Calmodulin-binding Proteins AT2G36910 36.500 1.19e-105 361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g01648 K05658 - gmx:100788127 2244.16