Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g01645 ATGTCTGAATTAGACGCACAGATTCCTACTACCTTCGATCCTTTTGCTGAGGCAAATGCTGATGACTCGGGTGCTGGGTCAAAGGAATATGTGCATATTCGCACACAGCAGAGAAATGGCAGGAAAAGCCTGACAACTGTTCAGGGATTGAAGAAAGAATTTAGCTATAACAAGATACTTAAAGATCTTAAGAAAGAGTTCTGTTGCAATGGTACAGTTATTCAGGACCCAGAACTAGGACAGGTGATTCAACTTCAAGGTGATCAGCGGAAGAATGTTTCTACGTTCCTAGTCCAGGCTGGTATCGTGAAGAAGGAGCATATCAAGATTCATGGTTTCTGA 342 0.424 MSELDAQIPTTFDPFAEANADDSGAGSKEYVHIRTQQRNGRKSLTTVQGLKKEFSYNKILKDLKKEFCCNGTVIQDPELGQVIQLQGDQRKNVSTFLVQAGIVKKEHIKIHGF* 114
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g01645 113 ProSiteProfiles Translation initiation factor SUI1 family profile. 31 101 IPR001950 GO:0003743|GO:0006413
Rops3g01645 113 Gene3D - 1 113 - -
Rops3g01645 113 NCBIfam translation initiation factor SUI1 6 113 IPR005874 GO:0003743
Rops3g01645 113 MobiDBLite consensus disorder prediction 1 27 - -
Rops3g01645 113 Pfam Translation initiation factor SUI1 28 102 IPR001950 GO:0003743|GO:0006413
Rops3g01645 113 PIRSF Transl_init_SUI1_Euk 1 113 IPR005874 GO:0003743
Rops3g01645 113 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR SUI1 8 113 - -
Rops3g01645 113 FunFam Eukaryotic translation initiation factor SUI1 2 113 - -
Rops3g01645 113 CDD eIF1_SUI1 29 112 IPR005874 GO:0003743
Rops3g01645 113 SUPERFAMILY eIF1-like 4 113 IPR036877 GO:0003743|GO:0006413
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g01645 Rops-Chr3 25547289 25550026 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops3g01645 1 113 Eukaryotic Initiation Factors Gene Family AT4G27130 87.611 4.10e-74 213
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g01645 K03113 - jre:108983673 224.172