Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g01642 ATGGCTTTCAATTGCAAAGAGAATCAGCTTTCACCACTCAAAGCAGAGGAAAACAATGCATTCCTCTCTGCCAGTGCACTTGTCTTCAGTCCCATCTATACTGCAGTTCTGAATGCTGCACTTGACTTCAACATATTTGAGATTATAGCTAAGGCAAGCTCACCTGGTGTCTCAGCCTCTGAGATCGCTTCTCAGCTTCAAACTCAGCACCCAGAATTACCACGCAAGCTTGATCGCATGTTGTGTCTGCTTGCAAGTCTCTCTCTTCTTACTTGTTCCACACGCATGAAAAATGATTCTGGGATTGAAAGACTCTATCAATTATCGTTGGCTGGTAAATACTTTGTCAATGATGAGAATACAGGCTCCCTCACTTCATTGCCAACGTTTAAATCTCACCGAGCAATGGTAGATGTTTGGTACCCTTCAATTAAGGGTATCAATTTTGATCTACCCCAAGTGATACAAAATGCTCTAGTTTATCCAGGAATTGAACATGTTGGAGGAGATATGTTCGAAAGTATTCCTACAGGTGATGCCATTATTTTAAAGTTTGTATGTCACAATTGGTCTGATGACAATTGCCTAAAGCTTTTGAGTAATTGCTACAAAGCTTTGCCACAAAATGGGAAGGTGATCGTTGTGGATTTCGTAATGTCTGAAGCGATTCAGTCATCTGATGCAGATAAGTTGGTTTATGGCCAAGACTTCTTCATTTCTCCTAAATCGACAAGGCTTCTCCTATTCCTACTTATTGGTGCAAAATGCAACGTTGTGCAAGTTGAAGGCAGTATAACTGAGGTGAAGAGAAGCATAGATATTGCACAAGAGCTCACTCCAAATCCAACTGATAGAAGAAATATAATTTACCACGTCTCCGGTGGAATGAACTCGCTATCGACTTGCTCCACTGAGGCGAAGCTAGAAGGAGGCGATGCGGCGGAGAAAGAGAACTGTTGGGAAAAGGACTTTGCTTGGTGTTTTTGGATGTGGGAGAGCAAAAATATAATTGTACCTGGTAAAGATGAATGGTCCATCGTGGACCCAAAAAACACAGCTACAACCAGTGTGGGTGTGGGAGGCTCAAGGCACTCTAACACATACAAAGATAGAAAGGCAGCAGGAGATAGAAAGGACAGAAAGTTTGGGACAATGGAATGGAGCAAAATAAGGGATATCATCGTTGTTGCAAATTCAACAAGTCCTGCAACACTTGGCTCAAAGCAACAAATGGGGGCCTATCTCAAGATCGAGGATAATCAGCAAAAGCTTCAAAAGGCGGTTTCGGACGTGTCTCAAGAAATCTACAAATACTATAAGTTGGAAATAGAGAGAGAATTTGGTGCTATTGAAGAGGTGGAACAAGCTGAATGTCAATGTTGTGGGCTCAAGGAGTAG 1398 0.4213 MAFNCKENQLSPLKAEENNAFLSASALVFSPIYTAVLNAALDFNIFEIIAKASSPGVSASEIASQLQTQHPELPRKLDRMLCLLASLSLLTCSTRMKNDSGIERLYQLSLAGKYFVNDENTGSLTSLPTFKSHRAMVDVWYPSIKGINFDLPQVIQNALVYPGIEHVGGDMFESIPTGDAIILKFVCHNWSDDNCLKLLSNCYKALPQNGKVIVVDFVMSEAIQSSDADKLVYGQDFFISPKSTRLLLFLLIGAKCNVVQVEGSITEVKRSIDIAQELTPNPTDRRNIIYHVSGGMNSLSTCSTEAKLEGGDAAEKENCWEKDFAWCFWMWESKNIIVPGKDEWSIVDPKNTATTSVGVGGSRHSNTYKDRKAAGDRKDRKFGTMEWSKIRDIIVVANSTSPATLGSKQQMGAYLKIEDNQQKLQKAVSDVSQEIYKYYKLEIEREFGAIEEVEQAECQCCGLKE* 466
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g01642 465 SUPERFAMILY "Winged helix" DNA-binding domain 16 119 IPR036390 -
Rops3g01642 465 Gene3D - 2 115 IPR036388 -
Rops3g01642 465 FunFam Caffeic acid 3-O-methyltransferase 4 115 - -
Rops3g01642 465 Pfam Dimerisation domain 36 85 IPR012967 GO:0046983
Rops3g01642 465 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 141 238 IPR029063 -
Rops3g01642 465 Gene3D Vaccinia Virus protein VP39 141 238 IPR029063 -
Rops3g01642 465 MobiDBLite consensus disorder prediction 356 375 - -
Rops3g01642 465 Pfam O-methyltransferase domain 138 231 IPR001077 GO:0008171
Rops3g01642 465 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 1 280 IPR016461 GO:0008168
Rops3g01642 465 PANTHER O-METHYLTRANSFERASE 34 126 IPR016461 GO:0008168
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g01642 Rops-Chr3 25490789 25491211 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops3g01642 136 236 Monolignol Biosynthesis Gene Families AT5G54160 54.455 6.54e-34 129
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g01642 K13066 - gmx:100784030 157.918