Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g01641 ATGAATGTGCTTCTCCAGTTGTTGCGCCACCAGTTCATTGTATATGGAGATGTCCGTGAAATTTCGTCGTCCCCATCTGCAAGAGAAGAGAAGAGAGCACAGTCGCATTCTGCTTCCAATTCTCAAGAGGGAACCATAGTAACAATGGCTTACGCTGCAATGAAACCCACTAAGCTAGGCTTGGAGGAGTCACAAGAGCATATCCACAAGATCAGGATCACCCTTTCCTCCAAGAATGTCAAGAATCTCGAGAAAGTTTGCACCGACCTGGTTCGTGGTGCCAAGGACAAGCGTCTCAGGGTCAAGGGACCTGTCAGGATGCCAACTAAAGTTCTTAACATCACCACCAGGAAATCCCCCTGTGGAGAAGAGCACCTTCTGTATCATCAGTTCTCAAAGGCAAAACTGCCATCTTCATTCAAAGAAGTGATTTTTAAAAGTTCAAACTTTGAATCCTTAAATTGGGGCCAAGAGCTAGTGTTGGTGCCAGTAAACTTCAAGTATAAGATCTCCATTGATCTTGGAACTAAACTCACACTATGCAGTCACCAAGCAATTTTTTATTTCCAGTTCCTCTTGGGGTTTGTGGTGGAGCTGTGGACAGTGGGTGATGATTTCAAGTACCAATATGCAGAGTCTTGGTTCAAACAAGTGGCGAAAGCACCAACCAACCTTATGCTTCACAACACAGCAAAGCTAGAATCATCCCAACTCCTACTTCGGCAGACACCGTCAGCTGTCCAGTTTGTTTGTCCCTCACATGTTCCAAGGAGGTGCATAAATTTAATCCAAACCCAACAACGCTGCTTTCGTCAAGGTACCAGGCTGCACAACACTCAAGATGATCCTCCAAACCAGCCCACTGGAGGTGATCCTACAGACCAGCCCAGTCAAGATGATCCCGTAGCTTGA 912 0.4605 MNVLLQLLRHQFIVYGDVREISSSPSAREEKRAQSHSASNSQEGTIVTMAYAAMKPTKLGLEESQEHIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKVLNITTRKSPCGEEHLLYHQFSKAKLPSSFKEVIFKSSNFESLNWGQELVLVPVNFKYKISIDLGTKLTLCSHQAIFYFQFLLGFVVELWTVGDDFKYQYAESWFKQVAKAPTNLMLHNTAKLESSQLLLRQTPSAVQFVCPSHVPRRCINLIQTQQRCFRQGTRLHNTQDDPPNQPTGGDPTDQPSQDDPVA* 304
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g01641 303 Pfam Ribosomal protein S10p/S20e 72 124 IPR027486 -
Rops3g01641 303 ProSitePatterns Ribosomal protein S10 signature. 94 109 IPR018268 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Rops3g01641 303 MobiDBLite consensus disorder prediction 275 303 - -
Rops3g01641 303 PANTHER 30S RIBOSOMAL PROTEIN S10 FAMILY MEMBER 25 132 IPR001848 GO:0003735|GO:0005840|GO:0006412
Rops3g01641 303 SUPERFAMILY Ribosomal protein S10 70 124 IPR036838 -
Rops3g01641 303 Hamap 30S ribosomal protein S10 [rpsJ]. 68 176 IPR001848 GO:0003735|GO:0005840|GO:0006412
Rops3g01641 303 Gene3D Ribosomal protein S10 domain 51 134 IPR036838 -
Rops3g01641 303 MobiDBLite consensus disorder prediction 275 295 - -
Rops3g01641 303 PRINTS Ribosomal protein S10 family signature 105 120 IPR001848 GO:0003735|GO:0005840|GO:0006412
Rops3g01641 303 PRINTS Ribosomal protein S10 family signature 70 83 IPR001848 GO:0003735|GO:0005840|GO:0006412
Rops3g01641 303 SMART Ribosomal_S10_2 72 169 IPR027486 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g01641 Rops-Chr3 25475980 25485226 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops3g01641 49 131 Cytoplasmic Ribosomal Protein Gene Family AT3G47370 80.723 5.00e-41 137
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g01641 K02969 - cit:102621376 143.28