LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Rops3g01621	ATGGATATTTTCGTCATTGAGTCGGCACAACCAAGCTATAAATACCACCCCTCCTTCCCCTTCTTTCATTCATCGCAATTAGCAATATCTGTTCACATAAAACCTAATTTCTCAGTTTCTGTTCTTCCAAATTTTCGTTTCAAGATGCAGATCTTTGTGAAAACTTTGACCGGAAAGACCATCACCCTTGAGGTGGAGAGTTCAGATACAATTGACAACGTGAAAGCTAAAATCCAAGACAAGGAAGGGATCCCACCTGACCAGCAAAGGCTCATATTTGCTGGTAAACAATTGGAGGATGGTCGCACCCTTGCTGATTACAACATTCAAAAGGAGTCCACCCTTCACCTCGTGCTCCGCCTCAGGGGTGGCATGCAAATCTTCGTCAAGACCTTGACCGGGAAAACCATCACCCTTGAAGTTGAATCCTCTGATACCATTGACAATGTCAAGGCCAAGATTCAGGACAAAGAGGGTATCCCTCCTGATCAGCAGAGGCTGATTTTTGCTGGGAAACAACTTGAGGATGGAAGAACCCTAGCTGATTATAACATCCAGAAGGAATCTACCCTTCACTTGGTACTCAGGTTGAGAGGTGGGATGCAGATTTTTGTAAAAACTTTGACAGGAAAGACAATAACTTTGGAGGTGGAGAGTTCAGATACCATTGACAATGTCAAGGCCAAGATTCAGGACAAGGAGGGTATTCCTCCAGATCAGCAGAGGTTGATTTTTGCTGGTAAACAACTTGAGGATGGAAGAACCCTTGCCGATTATAACATTCAGAAGGAATCCACCCTTCACTTGGTGCTCAGGTTGAGAGGTGGCATGCAAATTTTTGTTAAGACATTGACAGGAAAGACCATAACTTTGGAGGTGGAGAGTTCAGATACCATTGACAATGTCAAGGCCAAGATTCAGGACAAGGAGGGTATTCCTCCAGACCAGCAGAGGTTGATTTTTGCTGGTAAACAACTTGAGGATGGAAGAACCCTTGCCGATTATAACATTCAGAAGGAATCCACCCTTCACTTGGTGCTCAGGTTGAGAGGTGGCATGCAAATTTTTGTTAAGACATTGACAGGAAAGACCATAACTTTGGAGGTGGAGAGTTCAGATACCATTGACAATGTGAAAGCAAAGATTCAGGACAAGGAGGGCATTCCCCCAGACCAGCAGAGACTCATTTTTGCTGGCAAGCAATTGGAAGATGGTCGTACATTGGCAGATTACAATATTCAGAAGGAATCCACCCTCCATCTTGTCCTTCGCCTTCGTGGTGGCTTCTAA	1290	0.4434	MDIFVIESAQPSYKYHPSFPFFHSSQLAISVHIKPNFSVSVLPNFRFKMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGF*	430

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Rops3g01621	429	ProSitePatterns	Ubiquitin domain signature.	227	252	IPR019954	-
	Rops3g01621	429	PRINTS	Ubiquitin signature	59	79	IPR019956	-
	Rops3g01621	429	PRINTS	Ubiquitin signature	101	122	IPR019956	-
	Rops3g01621	429	PRINTS	Ubiquitin signature	80	100	IPR019956	-
	Rops3g01621	429	SUPERFAMILY	Ubiquitin-like	352	428	IPR029071	-
	Rops3g01621	429	SUPERFAMILY	Ubiquitin-like	123	200	IPR029071	-
	Rops3g01621	429	CDD	Ubl_ubiquitin	353	428	-	-
	Rops3g01621	429	SMART	ubq_7	353	424	IPR000626	GO:0005515
	Rops3g01621	429	SMART	ubq_7	49	120	IPR000626	GO:0005515
	Rops3g01621	429	SMART	ubq_7	125	196	IPR000626	GO:0005515

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Rops3g01621	Rops-Chr3	25159470	25161370	Dispersed/Proximal

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Rops3g01621	353	429	Cytoplasmic Ribosomal Protein Gene Family	AT3G52590	98.701	4.12e-47	156

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Rops3g01621	-		K08770	han:110936586	739.184

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