Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g01619 ATGTTAACAGGGCGGGACGGTGATGAGGACGGGTTATCCTCATCTTGTCGTGGCGGCCATGTCATCGATACACGTGGCACCTCCTTATTCGTCGATCCTTGGACATTTTCGTCATTGAGTCGGTATAACCGCGCTATAAATACCACCCCTCCTTCCCGTCCTTTCTACATCGCAATTCGCAATATCCTTTCACAAATACCTAATCTCGCTGTTCCTGTTCTTCCAAATTTTCATTTCAAGATGCAGATCTTTGTGAAAACTTTGACCGGCAAGACCATCACCCTTGAGGTGGAGAGTTCAGATACCATTGACAACGTGAAAGCCAAGATCCAAGACAAGGAAGGGATCCCACCTGACCAGCAAAGGCTCATATTTGCTGGTAAACAATTGGAGGATGGTCGCACCCTTGCTGATTACAACATTCAAAAGGAGTCCACCCTTCACCTCGTGCTCCGCCTCAGGGGTGGCATGCAAATCTTCGTCAAGACCTTGACCGGGAAAACCATCACCCTTGAAGTTGAATCCTCTGATACCATTGACAATGTCAAGGCCAAGATTCAGGACAAAGAGGGTATTCCTCCTGATCAGCAGAGGCTGATTTTTGCTGGGAAACAACTTGAGGATGGAAGAACCCTAGCTGATTATAACATTCAGAAGGAATCCACCCTTCACTTGGTGCTCAGATTGAGAGGGGGCATGCAAATTTTTGTTAAGACTTTGACAGGGAAGACAATAACTTTGGAGGTCGAGAGTTCGGATACCATTGATAATGTGAAAGCCAAGATTCAGGACAAGGAGGGCATCCCACCTGATCAGCAGAGGCTCATCTTTGCTGGGAAACAGCTCGAGGATGGAAGAACACTTGCTGATTATAACATTCAGAAGGAGTCCACTCTGCACTTGGTTTTGCGCCTTCGTGGAGGCATGCAAATTTTTGTGAAGACTTTAACTGGGAAGACTATAACTTTAGAGGTTGAAAGTTCTGATACCATTGATAATGTGAAGGCGAAGATCCAGGACAAAGAGGGCATTCCACCAGACCAGCAGAGGCTTATCTTCGCTGGGAAGCAGTTAGAAGATGGTCGTACTCTTGCTGATTATAACATTCAGAAGGAGTCCACACTGCACTTGGTCTTGCGGCTACGTGGAGGCATGCAAATATTTGTTAAGACCCTGACAGGGAAGACTATTACCTTGGAAGTGGAAAGCTCTGACACGATTGATAATGTGAAAGCAAAGATTCAGGACAAGGAGGGTATTCCCCCAGACCAGCAGAGGCTCATTTTTGCTGGCAAGCAATTGGAAGATGGACGTACCTTGGCAGATTATAATATTCAGAAGGAATCAACCCTCCATCTTGTCCTTCGCCTTCGTGGTGGCTTCTAA 1386 0.4639 MLTGRDGDEDGLSSSCRGGHVIDTRGTSLFVDPWTFSSLSRYNRAINTTPPSRPFYIAIRNILSQIPNLAVPVLPNFHFKMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGF* 462
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g01619 461 PANTHER UBIQUITIN 309 386 - -
Rops3g01619 461 FunFam Polyubiquitin 3 81 156 - -
Rops3g01619 461 CDD Ubl_ubiquitin 385 460 - -
Rops3g01619 461 SUPERFAMILY Ubiquitin-like 231 308 IPR029071 -
Rops3g01619 461 ProSitePatterns Ubiquitin domain signature. 183 208 IPR019954 -
Rops3g01619 461 FunFam Polyubiquitin 3 309 384 - -
Rops3g01619 461 SUPERFAMILY Ubiquitin-like 74 156 IPR029071 -
Rops3g01619 461 FunFam Polyubiquitin 3 385 460 - -
Rops3g01619 461 ProSitePatterns Ubiquitin domain signature. 335 360 IPR019954 -
Rops3g01619 461 CDD Ubl_ubiquitin 81 156 - -
Rops3g01619 461 PRINTS Ubiquitin signature 133 154 IPR019956 -
Rops3g01619 461 PRINTS Ubiquitin signature 112 132 IPR019956 -
Rops3g01619 461 PRINTS Ubiquitin signature 91 111 IPR019956 -
Rops3g01619 461 SUPERFAMILY Ubiquitin-like 383 460 IPR029071 -
Rops3g01619 461 CDD Ubl_ubiquitin 233 308 - -
Rops3g01619 461 CDD Ubl_ubiquitin 309 384 - -
Rops3g01619 461 Gene3D - 76 156 - -
Rops3g01619 461 Gene3D - 157 232 - -
Rops3g01619 461 Gene3D - 309 384 - -
Rops3g01619 461 Gene3D - 385 461 - -
Rops3g01619 461 Gene3D - 233 308 - -
Rops3g01619 461 ProSiteProfiles Ubiquitin domain profile. 157 232 IPR000626 GO:0005515
Rops3g01619 461 Pfam Ubiquitin family 235 306 IPR000626 GO:0005515
Rops3g01619 461 Pfam Ubiquitin family 83 154 IPR000626 GO:0005515
Rops3g01619 461 Pfam Ubiquitin family 387 458 IPR000626 GO:0005515
Rops3g01619 461 Pfam Ubiquitin family 311 382 IPR000626 GO:0005515
Rops3g01619 461 Pfam Ubiquitin family 159 230 IPR000626 GO:0005515
Rops3g01619 461 ProSiteProfiles Ubiquitin domain profile. 81 156 IPR000626 GO:0005515
Rops3g01619 461 SMART ubq_7 309 380 IPR000626 GO:0005515
Rops3g01619 461 SMART ubq_7 385 456 IPR000626 GO:0005515
Rops3g01619 461 SMART ubq_7 81 152 IPR000626 GO:0005515
Rops3g01619 461 SMART ubq_7 157 228 IPR000626 GO:0005515
Rops3g01619 461 SMART ubq_7 233 304 IPR000626 GO:0005515
Rops3g01619 461 ProSitePatterns Ubiquitin domain signature. 107 132 IPR019954 -
Rops3g01619 461 FunFam Polyubiquitin 3 157 232 - -
Rops3g01619 461 SUPERFAMILY Ubiquitin-like 308 384 IPR029071 -
Rops3g01619 461 ProSitePatterns Ubiquitin domain signature. 411 436 IPR019954 -
Rops3g01619 461 CDD Ubl_ubiquitin 157 232 - -
Rops3g01619 461 ProSiteProfiles Ubiquitin domain profile. 309 384 IPR000626 GO:0005515
Rops3g01619 461 FunFam Polyubiquitin 3 233 308 - -
Rops3g01619 461 ProSiteProfiles Ubiquitin domain profile. 233 308 IPR000626 GO:0005515
Rops3g01619 461 ProSitePatterns Ubiquitin domain signature. 259 284 IPR019954 -
Rops3g01619 461 ProSiteProfiles Ubiquitin domain profile. 385 460 IPR000626 GO:0005515
Rops3g01619 461 SUPERFAMILY Ubiquitin-like 156 232 IPR029071 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g01619 Rops-Chr3 25136059 25139948 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops3g01619 385 461 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 98.701 1.48e-46 155
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g01619 - K08770 tua:125520881 739.954