Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g01611 ATGAGCCACAACATGAACAATTTCACCCCTTTGCCAGGGCTTGGAAGGAGAAGTGTTAGTGCCTATGGTACTCACACATCTAATAGTAGTGAATCCAATGAAGTGCCTGTGTTTTACAGATCTCGCTCTACTCAGGCCACTGATGATCGGAGATCAGGTGAACTAGATCCACTGCGGTTGTGGGAAGTCAGAACTCCCACAGGACTCCACAGTATACCAAATTTTCCGGCACAACCACATAGCAGACAACAAACTAATGTTCGAAATGGGGACATGGGAAGAGACTTCAACCCCAGGTTCAGAGAGATTTTCATGCAGTCACCTTCAAGATCCACATTCCAAACAAGCACACAAGCTCCCCTAATGGTAGAAAATTCCAAATCAACTGTTTTAAGCAAGCTTAAGAAAGAAGTCTATAACCCTACCCCAAAGAGGTTAGTTAGGAATTTAAGCTCATATTATAGAGACAATGGTGTAAATTATTTGAAAGAGAGGGTGAAAGAAAAGGATGAAGATGGAAAGAGGTGTACTATTTGCTTGGAAGATTTTAAGCCCAAAGAAGAGGTGATGCTCACTCCATGCAACCACATGTTTCATGAGGATTGTATAGTTCCTTGGTTAACAAGCAAAGGTCAATGCCCAGTTTGTAGGTTTGTGATTTTTGAGAGAGTGAGGGGGAACCCTTCATCCTTCAACAGTAATGACATTGACAATTTGGAACCCAATGAGCTGATTGCTGGAGAGCTTTTGTCAATTTTGAGGGCCATGGAAGCAGCTTTTCAATTGGGCAGTATCAATTACTAA 804 0.4216 MSHNMNNFTPLPGLGRRSVSAYGTHTSNSSESNEVPVFYRSRSTQATDDRRSGELDPLRLWEVRTPTGLHSIPNFPAQPHSRQQTNVRNGDMGRDFNPRFREIFMQSPSRSTFQTSTQAPLMVENSKSTVLSKLKKEVYNPTPKRLVRNLSSYYRDNGVNYLKERVKEKDEDGKRCTICLEDFKPKEEVMLTPCNHMFHEDCIVPWLTSKGQCPVCRFVIFERVRGNPSSFNSNDIDNLEPNELIAGELLSILRAMEAAFQLGSINY* 268
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g01611 267 CDD RING-H2_SIS3 174 220 - -
Rops3g01611 267 MobiDBLite consensus disorder prediction 1 33 - -
Rops3g01611 267 SMART ring_2 176 216 IPR001841 -
Rops3g01611 267 MobiDBLite consensus disorder prediction 71 91 - -
Rops3g01611 267 MobiDBLite consensus disorder prediction 70 91 - -
Rops3g01611 267 FunFam RING/U-box superfamily protein 160 234 - -
Rops3g01611 267 SUPERFAMILY RING/U-box 166 225 - -
Rops3g01611 267 ProSiteProfiles Zinc finger RING-type profile. 176 217 IPR001841 -
Rops3g01611 267 PANTHER RING FINGER AND PROTEASE ASSOCIATED DOMAIN-CONTAINING 77 218 - -
Rops3g01611 267 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 161 230 IPR013083 -
Rops3g01611 267 Pfam Ring finger domain 175 217 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g01611 Rops-Chr3 24973394 24975092 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops3g01611 67 263 C3H Transcription Factor Family AT3G58720 41.176 8.54e-45 150
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g01611 - - gmx:100810607 348.206