Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g01598 ATGATGTCAAGATCGTATACAAATCTTTTAGATTTGGCTTCTGGGAATTTCCCAGCAATGGGGAGGGAGTTTAAGGAAAGAAGGCGGATGATGCCGAGGGTTATGAGTGTCCCTGGGATTGTCACTGAGGTGGACGATGATCAGGCAGTTAGTGTTTCTTCGGATAATCCATCAACTATTTCTACGGATCGAATTATCATTGTAGCAAACCAGCTACCTTTGAAAGCAAAGCGAAGAGAGGACAACAAAGGATGGAGCTTCAGTTGGAACGAGGATGCCTTGCTTTTACAGCTTAAGGATGGATTTCCGGAAGATATGGAGGTTCTTTATGTTGGGTCTTTGCGTGTTGACATTGATCCAGCTGAACAAGATGATGTGTCACAGTATTTATTGGAGAAGTTTAAATGTGTCCCAACTTTTCTACCCCCTGATGTTTTGACAAAATTTTATGATGGCTTCTGTAAAAGGCAGTTATGGCCACTTTTTCATTACATGTTACCGTTTTCGACTGATAAAAGCCACCGTTTTGATCGCACTTTGTGGGAAGCCTATGTGTTAGCAAATAAGCTATTCTTTCAAAAGGTAATTGAAATAATAAACCCAGAAGATGATTACATTTGGGTTCATGATTATCATTTGATGGTGCTGCCGACTTTTATCAGAAGGCGCTTTAACAGGGTTAAAATGGGATTTTTCCTGCATAGCCCCTTTCCATCATCAGAGATATATAGGACTCTTCCTGTCAGAGAAGAGATACTGAAAGCTTTACTAAACTCTGATATCATTGGATTCCATACCTTTGACTATGCTCGTCATTTCCTTTCCTGTTGCAGTCGTATGTTGGGTCTGGAGTATCAGTCAAAGAGGGGCTATCTAGGATTGGAATATTATGGAAGGACTATCAGTATTAAGATCATGCCTGTTGGGATTCACATGGGTCGGATTGAATCAGTTATGAGAATGGCGGATGAGGAATGTAAGGCAAGGGAGCTCAAACAGCGATTTGAAGGAAAAACCATCTTGCTTGGTGTTGATGATATGGACATTTTTAAAGGCATAAATTTGAAGATTTTGGCTATGGAGCAGATGCTTAGACAACACCCCAAATGGCAAGGAAGAGCTGTTCTGGTCCAGATAGTTAATCCCGCCAGAGGTAATGGGATACATCTAGAGGAGATATATACTGAAATACAAGAAAGCTGCAGCAGGATCAACAGGGTGTTTGGACGACCTGGTTATGAACCTATTGTTATTATTGATAGATCAGTTCCAATTACTGAAAAAGTTGCTTATTACAGCCTTGCTGAGTGTGTTATTGTCACGGCTGTAAGGGATGGGATGAACCTAACTCCTTATGAATATATCGCTTGTAGACAGGGAATATCTGGTTCTGAATCATGTTCCAATGTCAGTGACCCAAAGAAGAGTATGCTAGTGATATCAGAATTTATTGGGTGTTCTCCATCACTTAGTGGGGCTATCCGTGTCAATCCATGGAATGTTGAAGCAACTGCTGAGGCAATGAATGAAGCCATCTCAATGGGTGATGGAGAGAAACAGTTGCGACATGAAAAGCATTACCGGTATGTCAGCACTCATGATGTGGCTTACTGGTCACGCAGTTTCTTGCAAGACATGGAGAGGGCTTGCTCTGACCTTCTTAAGAAAAGATGTTGGGGAATAGGTCTTAGCTTTGGATTTAGAGTTGTGGCGCTTGACCCTAATTTTAAAAAACTCTCAATTGATGCTATGGTTTCAGCTTACAAGAGGGCAAGGAGTAGGGCCATTTTGTTGGACTATGATGGTACTGTGATGCCACAGAACTCCATTAATAAGAGTCCAAGCAAGGAAGTACTCTCTATTTTAGAAACACTTTGTGCAGACTCCAAAAATACAGTTTTCATTGTTAGTGGACGGGGGAGGGATAGCTTAAGTGAATGGTTTATTCCCTGCAAAAAACTTGGAATTGCTGCAGAACATGGGTACCTCTTGAGATGGACCCAGAATGGAGAATGGGAAATTTGTGGTAAGTGCACCGATTTTGGATGGATGCAGATTGCTGAACCTGTAATGAAACTATATACAGAGGCAACTGATGGTTCCAGCATTGAACGAAAGGAAAGTGCTTTGGTCTGGCAATACCGGGATGCAGACCTTGGTTTTGGATCTTCTCAGGCTAAGGAAATGTTAGATCATCTAGAAAGTGTTTTGGCCAATGAGCCTGTTGCCGTAAAGAGTGGCCAGTTTATTGTTGAAGTGAAGCCCCAGGACGTGAGCAAAGGCTTAGTTGCTGAAAAGGTATTTTCATCAATGGCTGAGAATGGTAAACAAGCTGACTTTGTGCTATGTGTTGGTGATGACAGATCAGATGAGGACATGTTTGAAATAGTTAGTAGTGCAATCTCAAGAAATATTCTTTCCACCAATGCTTCTGTATTTGCTTGCACGGTTGGACAAAAACCAAGTAAAGCCAAGTATTATCTGGATGATACATCTGACGTAATAAGCATGCTAGAATCTTTGGCTGAAGAATCAGATTCTTCACCCTACATAGAAGAATCGGGGGATTCCTCTTGA 2577 0.4148 MMSRSYTNLLDLASGNFPAMGREFKERRRMMPRVMSVPGIVTEVDDDQAVSVSSDNPSTISTDRIIIVANQLPLKAKRREDNKGWSFSWNEDALLLQLKDGFPEDMEVLYVGSLRVDIDPAEQDDVSQYLLEKFKCVPTFLPPDVLTKFYDGFCKRQLWPLFHYMLPFSTDKSHRFDRTLWEAYVLANKLFFQKVIEIINPEDDYIWVHDYHLMVLPTFIRRRFNRVKMGFFLHSPFPSSEIYRTLPVREEILKALLNSDIIGFHTFDYARHFLSCCSRMLGLEYQSKRGYLGLEYYGRTISIKIMPVGIHMGRIESVMRMADEECKARELKQRFEGKTILLGVDDMDIFKGINLKILAMEQMLRQHPKWQGRAVLVQIVNPARGNGIHLEEIYTEIQESCSRINRVFGRPGYEPIVIIDRSVPITEKVAYYSLAECVIVTAVRDGMNLTPYEYIACRQGISGSESCSNVSDPKKSMLVISEFIGCSPSLSGAIRVNPWNVEATAEAMNEAISMGDGEKQLRHEKHYRYVSTHDVAYWSRSFLQDMERACSDLLKKRCWGIGLSFGFRVVALDPNFKKLSIDAMVSAYKRARSRAILLDYDGTVMPQNSINKSPSKEVLSILETLCADSKNTVFIVSGRGRDSLSEWFIPCKKLGIAAEHGYLLRWTQNGEWEICGKCTDFGWMQIAEPVMKLYTEATDGSSIERKESALVWQYRDADLGFGSSQAKEMLDHLESVLANEPVAVKSGQFIVEVKPQDVSKGLVAEKVFSSMAENGKQADFVLCVGDDRSDEDMFEIVSSAISRNILSTNASVFACTVGQKPSKAKYYLDDTSDVISMLESLAEESDSSPYIEESGDSS* 859
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g01598 858 Gene3D Glycogen Phosphorylase B; 318 531 - -
Rops3g01598 858 FunFam alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6 57 316 - -
Rops3g01598 858 FunFam Alpha,alpha-trehalose-phosphate synthase 318 531 - -
Rops3g01598 858 Gene3D - 722 852 IPR023214 -
Rops3g01598 858 Gene3D - 593 692 IPR023214 -
Rops3g01598 858 FunFam alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6 593 710 - -
Rops3g01598 858 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 63 550 - -
Rops3g01598 858 Pfam Glycosyltransferase family 20 64 547 IPR001830 GO:0003824|GO:0005992
Rops3g01598 858 NCBIfam trehalose-phosphatase 591 842 IPR003337 GO:0003824|GO:0005992
Rops3g01598 858 Pfam Trehalose-phosphatase 597 832 IPR003337 GO:0003824|GO:0005992
Rops3g01598 858 SUPERFAMILY HAD-like 594 842 IPR036412 -
Rops3g01598 858 CDD HAD_TPP 595 834 - -
Rops3g01598 858 Gene3D Glycogen Phosphorylase B; 57 317 - -
Rops3g01598 858 PANTHER TREHALOSE-6-PHOSPHATE SYNTHASE 30 843 IPR001830 GO:0003824|GO:0005992
Rops3g01598 858 CDD GT20_TPS 64 547 IPR001830 GO:0003824|GO:0005992
Rops3g01598 858 FunFam Alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6 723 854 - -
Rops3g01598 858 NCBIfam HAD-IIB family hydrolase 596 800 IPR006379 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g01598 Rops-Chr3 24788968 24794254 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops3g01598 1 850 Trehalose Biosynthesis Gene Families AT1G06410 77.412 0.0 1382
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g01598 K16055 - gmx:100811463 1600.1