Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g01594 ATGGCTCCGGAACATCAACAACCATCGCAGTTTCAGGCGCAAGCGGAAGTTCCTCGACGTAGCTCCGATATGGAGACAGAAAAGGAAATGTCAGCTACTGTCCTCGAAGGGAATGATGCAGTCACTGGCCACATAATCTCCACCACAATTGGAGGCAAGAATGGTGAACCCAAACGGACCATCAGTTACATGGCAGAACGTGTTGTCGGCACTGGATCATTTGGAGTTGTTTTCCAGGCAAAGTGCTTGGAGACTGGGGAGGCAGTGGCTATTAAAAAGGTCTTGCAAGACAGGCGGTACAAAAATCGTGAGCTGCAGTTAATGCGCTTGATGGGTCACCCAAATGTAATTTCCTTGAAGCATTGTTTCTTCTCTACAACTAGCAGAGATGAGCTTTTTCTGAACTTGGTAATGGAATATGTCCCTGAGAATATGTACCGAGTTCTGAAGCACTATAATACCATGAACCAGAGAATGCCTCTGATCTATGTGAAACTATATACATATCAAATCTTTAGGGGATTAGCTTATATCCATACCGCACTGGGAGTTTGCCATAGGGATGTGAAGCCTCAAAATCTTTTGGTTCATCCTCTTACTCACCAAGTTAAGCTTTGTGATTTCGGGAGTGCCAAAGCTCTGGTCAAGGGTGAATCAAACATTTCATACATCTGTTCACGTTACTATCGGGCTCCCGAACTAATATTTGGCGCAACAGAATACACAACTTCTATTGATATCTGGTCAGCTGGTTGCGTCCTTGCCGAACTTCTTCTAGGCCAGCCATTATTTCCAGGAGAAAATCAGGTGGACCAACTTGTGGAAATTATTAAGGTTCTTGGTACTCCAACTCGAGAAGAAATTCGTTGCATGAACCCAAATTATACAGATTTTAGATTCCCTCAGATTAAAGCTCATCCTTGGCACAAGGTTTTCCACAAGCGAATGCCTCCTGAAGCAATTGACCTTGCATCAAGGCTTCTCCAATATTCACCCAGTCTTCGCTGCACTGCGCTGGAAGCATGTGCACATCCTTTCTTTGATGAGCTTCGTGAGCCGAATGCCCGACTACCAAATGGCCGCCCACTGCCCCCGCTTTTCAACTTTAAACAGGAATTAGCTGGAGCATCACCTGAACTGATCAATAGGCTCATCCCAGAGCACATTAGGCGGCAGACTGGTCTCGGCTTCCCTCATCCGGCTGGTACGTAG 1212 0.4596 MAPEHQQPSQFQAQAEVPRRSSDMETEKEMSATVLEGNDAVTGHIISTTIGGKNGEPKRTISYMAERVVGTGSFGVVFQAKCLETGEAVAIKKVLQDRRYKNRELQLMRLMGHPNVISLKHCFFSTTSRDELFLNLVMEYVPENMYRVLKHYNTMNQRMPLIYVKLYTYQIFRGLAYIHTALGVCHRDVKPQNLLVHPLTHQVKLCDFGSAKALVKGESNISYICSRYYRAPELIFGATEYTTSIDIWSAGCVLAELLLGQPLFPGENQVDQLVEIIKVLGTPTREEIRCMNPNYTDFRFPQIKAHPWHKVFHKRMPPEAIDLASRLLQYSPSLRCTALEACAHPFFDELREPNARLPNGRPLPPLFNFKQELAGASPELINRLIPEHIRRQTGLGFPHPAGT* 404
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g01594 403 CDD STKc_GSK3 58 350 IPR039192 -
Rops3g01594 403 Pfam Protein kinase domain 63 347 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops3g01594 403 ProSitePatterns Protein kinases ATP-binding region signature. 69 93 IPR017441 GO:0005524
Rops3g01594 403 FunFam Glycogen synthase kinase-3 beta 47 142 - -
Rops3g01594 403 MobiDBLite consensus disorder prediction 1 19 - -
Rops3g01594 403 Gene3D Phosphorylase Kinase; domain 1 48 142 - -
Rops3g01594 403 SMART serkin_6 63 347 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops3g01594 403 FunFam Shaggy-related protein kinase kappa 143 390 - -
Rops3g01594 403 ProSitePatterns Serine/Threonine protein kinases active-site signature. 184 196 IPR008271 GO:0004672|GO:0006468
Rops3g01594 403 PANTHER GLYCOGEN SYNTHASE KINASE-3 ALPHA 27 392 - -
Rops3g01594 403 ProSiteProfiles Protein kinase domain profile. 63 347 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops3g01594 403 Gene3D Transferase(Phosphotransferase) domain 1 143 390 - -
Rops3g01594 403 SUPERFAMILY Protein kinase-like (PK-like) 62 371 IPR011009 -
Rops3g01594 403 MobiDBLite consensus disorder prediction 1 30 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g01594 Rops-Chr3 24690715 24700673 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops3g01594 67 385 MAP Kinase Gene Family AT3G59790 35.329 7.60e-58 192
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_GSK Rops3g01594 Pkinase 6.7e-64 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g01594 K14502 - gmx:100810924 778.474