Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g01590 ATGTCAGGTGTGGGCCCTGTTTCTCAGGATTGGGAACCCGTCGTCCTCCGGAAGAAAGCCCCAACCGCCGCCGCCAAGAAAGACGAGAAAGCCGTCAACGCCGCCCGTCGCGCTGGCGCCGATATCGACACCGTCAAGAAATATAATGCTGGGACAAACAAAGCTGCATCTAGCAGCACTTCAATGAACACTAAGAGGCTGGATGACGATACAGAGAATCTATCTCATGATCGTGTTCCAACTGAACTCAAGAAGGCCATAATGCAAGCTAGGATGGACAAGAAACTTACTCAAGCTCAGCTTGGTCAAATGATCAATGAGAAGCCTCAAGTGATCCAAGAGTATGAGTCTGGGAAGGCCATTCCAAACCAGCAGATAATTGGCAAGTTGGAGAGAGCCCTTGGAACTAAACTGCGTGGCAAGAAATAA 429 0.4965 MSGVGPVSQDWEPVVLRKKAPTAAAKKDEKAVNAARRAGADIDTVKKYNAGTNKAASSSTSMNTKRLDDDTENLSHDRVPTELKKAIMQARMDKKLTQAQLGQMINEKPQVIQEYESGKAIPNQQIIGKLERALGTKLRGKK* 143
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g01590 142 ProSiteProfiles Cro/C1-type HTH domain profile. 87 141 IPR001387 -
Rops3g01590 142 Gene3D - 71 142 IPR010982 GO:0003677
Rops3g01590 142 FunFam Multiprotein bridging factor 1 71 142 - -
Rops3g01590 142 PANTHER ENDOTHELIAL DIFFERENTIATION-RELATED FACTOR 1 MULTIPROTEIN BRIDGING FACTOR 1 9 142 - -
Rops3g01590 142 Pfam Multiprotein bridging factor 1 9 79 IPR013729 -
Rops3g01590 142 Pfam Helix-turn-helix 87 138 IPR001387 -
Rops3g01590 142 SMART mbf_short4 86 141 IPR001387 -
Rops3g01590 142 SUPERFAMILY lambda repressor-like DNA-binding domains 80 138 IPR010982 GO:0003677
Rops3g01590 142 CDD HTH_XRE 85 138 IPR001387 -
Rops3g01590 142 MobiDBLite consensus disorder prediction 52 77 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g01590 Rops-Chr3 24595657 24599430 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR MBF1 Rops3g01590 MBF1 5.1e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g01590 K03627 - gmx:100500420 261.536