Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g01585 ATGACACAAGCCAAGGCTTGTTGCCTTGTTCCATTTGCAAAGCTTGGCAGCTTGCTCAAATATACAAGTCAAAGCTTGTCACCTTGCACCATTTGCAAAGGTGGTATCACCGTGCACCCATGCACTCCCACGGATCAATCCCTCAACTCCACCCCCACCACTACCACCACCGATTACTCCTTGTCATCCACCCCTGAAGTCTTGAACTTTGAATTCTCCGGCAAATGGGCACCCGACATCCTCATCGAAACTGCACGTGCCATTGCTGGCAAGAACAGCAATCGAGTGCAACAACCGATGTGGATGCTGAATGAACTAAGCTCCCCTTATGGTGACATCGATCAAAAGCTTGCAGCTTATTTTCTTCAAGCCTTGTTTAGCCGCATGACTGATGCAGGGGACCGAACCTACCGAACCTTAGCTTTGGCTTCTGAGAAAACATGCTCCTTCGAATCAACGAGGAAGATGTTGTTGAAGTTTCAAGAGGTTAGTCCATGGACAACCTTCGGCCACGTGGCTTCTAATGGTGCCATCTTAGAAGCCTTAGAAGGTAACCCTAAACTCCACATAGTTGGCATTAGCAACACATATTGCACCCAATGGCCTACCCTTCCAGAAGCTCTCGCCACTCGCACCGATGCCACCCCTCACCTCAGGTTAACCTCCGTCATCACCGGTGGCGGCTCCGTTCGAAGGGTAATGAAGGAAATAGGCACGAGGATGGAGAAATTCGCGAGACTCATGGGAGTGCCATTCAAATTCAACGTCATTCACCACTCCGGTGATCTTTCAAACTTCAACTTCTCTGAGTTGGACATCCAAGACGACGAAGCTTTGGCCGTTAATTGTGTCAACTCTTTACACTCAGTAACCGCCACCGGAAATAACCGTGACGCGTTGATATCTTTGCTTCGTGGATTGAATCCTAGGGTTTTGACGGTGGTGGAAGAGGAAGCTGATCTCGACGTTGGTTATGAGTTCGTGGAAGGGTTCAGAGAGTGTTTGAGATGGTTTAGGGTTTACTTTGAAGCACTTGACGAGAGCTTTGCGAGGACAAGTAGCGAGAGATTGATGCTGGAACGTGCAGCGGGGAAAGCCATCGTTGACTTGCTTGCTTGCGATCCCTCCGAGTCGGTGGAGCGTCGGCACACGGCGGCGCGGTGGACCCAACGTATGTATGGCGGTGGGTTCAATACGATGCCGTTTAGCGAGGAGGTTTGCGACGACATGAGGGCACTGTTACGGAGGTACTCGGAGGGGTGGTCGATGACACAGTGCTCCGACGCGGGGATATTCTTGTCGTGGAAGGACCAGCCGGTGGTGCGGGCCAGTGCAGGGAAGCCTTGA 1347 0.5145 MTQAKACCLVPFAKLGSLLKYTSQSLSPCTICKGGITVHPCTPTDQSLNSTPTTTTTDYSLSSTPEVLNFEFSGKWAPDILIETARAIAGKNSNRVQQPMWMLNELSSPYGDIDQKLAAYFLQALFSRMTDAGDRTYRTLALASEKTCSFESTRKMLLKFQEVSPWTTFGHVASNGAILEALEGNPKLHIVGISNTYCTQWPTLPEALATRTDATPHLRLTSVITGGGSVRRVMKEIGTRMEKFARLMGVPFKFNVIHHSGDLSNFNFSELDIQDDEALAVNCVNSLHSVTATGNNRDALISLLRGLNPRVLTVVEEEADLDVGYEFVEGFRECLRWFRVYFEALDESFARTSSERLMLERAAGKAIVDLLACDPSESVERRHTAARWTQRMYGGGFNTMPFSEEVCDDMRALLRRYSEGWSMTQCSDAGIFLSWKDQPVVRASAGKP* 449
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g01585 448 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 79 437 IPR005202 -
Rops3g01585 448 Pfam GRAS domain family 80 445 IPR005202 -
Rops3g01585 448 ProSiteProfiles GRAS family profile. 68 447 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g01585 Rops-Chr3 24399880 24401226 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops3g01585 59 448 GRAS Transcription Factor Family AT4G37650 63.547 0.0 528
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Rops3g01585 GRAS 4.5e-98 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g01585 - - gmx:100778524 622.854