Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g01580 ATGGACTCCGTCACCGGAGCTCCGTCATCCACCGCCATCGCTCCGCCGCGTCCTCCGTCATCGTCGCCGTTCCCCGGCCGTGAAGACTGCTGGAGCGAGGACGCCACTTTCACCCTCATCGACGCCTGGGGCGAACGCTACATCGAACTCAACCGCGGCAACCTCCGCCAGAAACACTGGCAGGAAGTCGCCGACTCCGTCAACGACCGCCACGCCGCCGGCGCCGGCAACAACAAGAAAGCGCGCCGAACCGACGTTCAGTGCAAGAACCGAATCGACACGCTAAAGAAGAAGTACAAGATCGAGAAAGCTAGGGTTTCCGAATCCGACGGCGGTTACCGGAGTCCCTGGCCGTTCTTCTCCCGCCTCGACGCTCTCATCGGCGACACTTTTCCGGTCAAGAAATTCTCGCCGCCGGCCACCGCAAGGACCGCCGCCATGAAGCCTCCTCCGCCGCCGTGGATTATCTCACACCCGGTCGGTCCCCGATCCGGAACTCAGAAACGTCCGGCGCCGGCGCCGATCAGGAATGACTCTCCCTTCCGCCGGAATTTCTCGGCCTTCGCCGCGGCGGCGGCGGCTGCAGCGGAGGCGGAGAGCGGTGAGTCGGAGGAATGGAGGTCTAGGTCGAGCAGTGGTGGCAGTGGGAGTGGTAAAAAGGGACGAGAGAGTGATAAGGATTTGGAATTTGGGTACAGAGAACTTGCTCAAGCTATTGAGAGGTTTGGTGAGATATATGAGAGAGTGGAAGCTCAGAAGCAGAGGCAAATGGTGGAATTGGAGAAGCAGAGGATGCAGTTTGCTAAGGATTTGGAGTACCAGAGAATGCAGCTTTTCATGGAAACACAGGTTCAACTTCAGAAAATCAAACGCACTAAGCGATCTTCTGGTGCTGCTGACAGTTTCTCATAG 912 0.5844 MDSVTGAPSSTAIAPPRPPSSSPFPGREDCWSEDATFTLIDAWGERYIELNRGNLRQKHWQEVADSVNDRHAAGAGNNKKARRTDVQCKNRIDTLKKKYKIEKARVSESDGGYRSPWPFFSRLDALIGDTFPVKKFSPPATARTAAMKPPPPPWIISHPVGPRSGTQKRPAPAPIRNDSPFRRNFSAFAAAAAAAAEAESGESEEWRSRSSSGGSGSGKKGRESDKDLEFGYRELAQAIERFGEIYERVEAQKQRQMVELEKQRMQFAKDLEYQRMQLFMETQVQLQKIKRTKRSSGAADSFS* 304
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g01580 303 MobiDBLite consensus disorder prediction 144 158 - -
Rops3g01580 303 Pfam Myb/SANT-like DNA-binding domain 28 126 IPR044822 -
Rops3g01580 303 MobiDBLite consensus disorder prediction 196 228 - -
Rops3g01580 303 MobiDBLite consensus disorder prediction 141 180 - -
Rops3g01580 303 Coils Coil 246 266 - -
Rops3g01580 303 MobiDBLite consensus disorder prediction 1 29 - -
Rops3g01580 303 MobiDBLite consensus disorder prediction 66 85 - -
Rops3g01580 303 FunFam trihelix transcription factor ASIL2 31 101 - -
Rops3g01580 303 PANTHER TRIHELIX TRANSCRIPTION FACTOR ASIL2 16 293 IPR044823 -
Rops3g01580 303 Gene3D - 31 101 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g01580 Rops-Chr3 24242186 24245919 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops3g01580 232 291 Trihelix Transcription Factor Family AT3G14180 53.333 2.19e-15 74.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Rops3g01580 Myb_DNA-bind_4 1.6e-25 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g01580 - - lang:109355153 361.303