Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g01577 ATGGGGAAGAAGAAGAAGAGGGTTTCTTCTAAAGTGTGGTGTTATTACTGCGATCGCGAATTTGACGACGAGAAGATCTTGGTTCAGCATCAGAAAGCCAAGCACTTCAAGTGCCATGTCTGTCATAAAAAGCTCTCCACCGCCGGCGGCATGGCCATCCACGTCCTCCAGGTTCACAAGGAATCCGTCATCAAGGTGCCCAATGCGAAACCTGGAAGAGAGAGTACAGATATTGAAATATATGGAATGCATGGGATTCCAGCAGATGTCTTGGCTGCTCGTTATGGAGAAGAAGAAGATGACGTTCCATCAAAGGCAGCCAAGGTGGATATTCCATCAACTCAGTTTGTAGGTGGGATAGTGCCACCTCCTTTGGGTGCAGGTTATCCTCCTCGATCAACCATGGGCCCAGCCACTCCTCGACTTGATGGTGTTTCGTGGACGAGCTCTGCGACTCATATTGGATTTAAGTAG 474 0.4873 MGKKKKRVSSKVWCYYCDREFDDEKILVQHQKAKHFKCHVCHKKLSTAGGMAIHVLQVHKESVIKVPNAKPGRESTDIEIYGMHGIPADVLAARYGEEEDDVPSKAAKVDIPSTQFVGGIVPPPLGAGYPPRSTMGPATPRLDGVSWTSSATHIGFK* 158
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g01577 157 ProSitePatterns Zinc finger C2H2 type domain signature. 38 59 IPR013087 -
Rops3g01577 157 ProSitePatterns Zinc finger C2H2 type domain signature. 14 35 IPR013087 -
Rops3g01577 157 SMART c2h2final6 12 35 IPR013087 -
Rops3g01577 157 SMART c2h2final6 36 59 IPR013087 -
Rops3g01577 157 Gene3D Classic Zinc Finger 1 65 - -
Rops3g01577 157 SUPERFAMILY beta-beta-alpha zinc fingers 12 61 IPR036236 -
Rops3g01577 157 CDD SUF4-like 13 92 - -
Rops3g01577 157 ProSiteProfiles Zinc finger BED-type profile. 7 66 IPR003656 GO:0003677
Rops3g01577 157 PANTHER ZINC FINGER PROTEIN 207 1 141 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g01577 Rops-Chr3 24124710 24125183 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops3g01577 1 140 C2H2 Transcription Factor Family AT1G30970 75.352 3.58e-71 217
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Rops3g01577 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g01577 - - tpra:123918401 266.544