Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g01574 ATGTATTCATTGAGTCACCCACCAATCTCTCTTTCTCTCTGTTCTCAAGAAAATAACTTGAAAGCTGCTTTGGCAGCAATGAGTCTTCCATCAAAAAAGGTTGAATTCTGTGTAGGTGACAAAGTGGAAGTGTGCAGCAGAGAAGATGGATTCATTGGATCCTATTACGAAGCCACTATAGTACAACACCTTGATAATAATGGCCTTTACATGGTTTGTTATAAGAACCTTCTGGAAGAGGATGAATCTAAGCCTCTCACTGATACTGTTGATCCCATTGAGCTGCGTCCCTTGCCACCTCGTCTACATGTTTCCGAGTTCAAGCCTTTCCAGGCCGTTGATGCTTTTGATAATGATGGTTGGTGGGCTGGGAATATAACTGGCAGAAGGGGTTCTAACTATGACGTGTATTTCACCACTACAAATGAACACATAGAATACCCTTCCTCTAAGATCAGGCTTCACCATGATTGGGAAGATGGGGAGTGGCGTTTGTTGTCTTATGGTGTGTCTTGA 516 0.4283 MYSLSHPPISLSLCSQENNLKAALAAMSLPSKKVEFCVGDKVEVCSREDGFIGSYYEATIVQHLDNNGLYMVCYKNLLEEDESKPLTDTVDPIELRPLPPRLHVSEFKPFQAVDAFDNDGWWAGNITGRRGSNYDVYFTTTNEHIEYPSSKIRLHHDWEDGEWRLLSYGVS* 172
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g01574 171 CDD Tudor_Agenet_AtDUF_rpt2_4 113 154 - -
Rops3g01574 171 SMART agenet_At_2 105 160 IPR014002 -
Rops3g01574 171 SMART agenet_At_2 34 103 IPR014002 -
Rops3g01574 171 Pfam Agenet domain 39 100 IPR008395 -
Rops3g01574 171 PANTHER AGENET DOMAIN-CONTAINING PROTEIN-RELATED 32 163 - -
Rops3g01574 171 CDD Tudor_Agenet_AtDUF_rpt1_3 36 100 - -
Rops3g01574 171 Gene3D - 27 110 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g01574 Rops-Chr3 24034024 24034539 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops3g01574 46 161 PHD Transcription Factor Family AT5G58610 25.362 2.79e-07 47.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g01574 - - adu:107478045 170.244