Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g01572 ATGCGTCCTCCATTGAAAAGGGTCGATTTCAAAGTAGGTGATAAAGTTGAGGTTTGCAGCAAAGAAGAGGGGTTCATAGGTTCTTATTATGAGGCTACCATTGTTCAACATCTTGACAATGGCCTCTATATGGTTCGTTACAAGAACCTTCTTGAAGAGGATGAATCTGAGCCTCTGACAGAGACCCTTTATCCCAAGGAGCTTCGTCCCACGCCACCACGTGTCAGGAATCACGAATTCAAGCTTTACCAGAATGTGGATGCTTTTGACAATGATGGATGGTGGTTTGGAAAGATCACTGGTAAAAGGGGTTCTCGTTATTTGGTGTATTTCACCACCACAAATGAAGAGATAGAATACCCTTCTTCTAAGATTAGGGTTCATCATGAGTGGGTTAATGGGGAGTGGCATTTGTTCGATTGA 423 0.4303 MRPPLKRVDFKVGDKVEVCSKEEGFIGSYYEATIVQHLDNGLYMVRYKNLLEEDESEPLTETLYPKELRPTPPRVRNHEFKLYQNVDAFDNDGWWFGKITGKRGSRYLVYFTTTNEEIEYPSSKIRVHHEWVNGEWHLFD* 141
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g01572 140 CDD Tudor_Agenet_AtDUF_rpt1_3 10 73 - -
Rops3g01572 140 Pfam Agenet domain 13 73 IPR008395 -
Rops3g01572 140 Gene3D - 1 85 - -
Rops3g01572 140 PANTHER AGENET DOMAIN-CONTAINING PROTEIN-RELATED 9 136 - -
Rops3g01572 140 CDD Tudor_Agenet_AtDUF_rpt2_4 84 127 - -
Rops3g01572 140 SMART agenet_At_2 78 133 IPR014002 -
Rops3g01572 140 SMART agenet_At_2 8 76 IPR014002 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g01572 Rops-Chr3 23987542 23988476 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops3g01572 20 140 PHD Transcription Factor Family AT5G58610 26.490 2.76e-09 52.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g01572 - - adu:107478045 212.231