Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g01571 ATGGATTTTCCTTTGAATAGTCCCGATTTCCAAATAGGCGAAAAAGTTGAGGTTTGCAGTAAAGAAGACGGATTTGTCGGCTCTTACTATGAAGCCACCATTTTGCAATACCTTGACAATGGTCATTACATGGTTCGTTACAAGAACCTTCTTGAAGAGGATATGTCTAGGCCTCTCATTGAGACCATTCACCCAAAAGAGATTCGACCGTTGCCACCACGTGTGCATATTACTGAGTTCAGGCTTAACGAGAGGGTTGATGTTTTCGAAAATGATGGTTGGTGGATTGGGAAGATCACTAGGAGAAGGGGTTCTCACTACCACGTATATTTCATCACCATAAATGAGGAGAAAGTATATCATTTCTCTCGTATCAGGCTTCACAATGAGTGGGCTAATGGGGAATGGGTTTGA 414 0.4227 MDFPLNSPDFQIGEKVEVCSKEDGFVGSYYEATILQYLDNGHYMVRYKNLLEEDMSRPLIETIHPKEIRPLPPRVHITEFRLNERVDVFENDGWWIGKITRRRGSHYHVYFITINEEKVYHFSRIRLHNEWANGEWV* 138
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g01571 137 CDD Tudor_Agenet_AtDUF_rpt1_3 10 73 - -
Rops3g01571 137 SMART agenet_At_2 78 133 IPR014002 -
Rops3g01571 137 SMART agenet_At_2 8 76 IPR014002 -
Rops3g01571 137 Pfam Agenet domain 13 73 IPR008395 -
Rops3g01571 137 PANTHER AGENET DOMAIN-CONTAINING PROTEIN-RELATED 9 137 - -
Rops3g01571 137 Gene3D - 3 82 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g01571 Rops-Chr3 23955905 23956422 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops3g01571 20 131 PHD Transcription Factor Family AT5G58610 27.612 7.45e-10 53.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g01571 - - gmx:106794115 173.711