Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g01569 ATGTCTGACCATTCACTCTTCACTCAAACCAGGGGATCTTTTGTATCCATGCTGTTCGAGAGCATGCGTGGGACCTGCACCTCGGCTTCTCGAGAGCTCCCTCACACTGCTGCCTCCTTCAAACTCAAGCTCTCCATCCACACACTCCAAAGCACACCTTCTTGCAAGGGCAAGGTTGGTGAAGAAAGTGACATATTCAAGATAGTGAGAATGACCATTCAACGTCAATATGACCCCATGATACTGTTCGGCTTTGGCAAAAGGGAGTGCGAGCTTCTTGCAATGCAGATGGAAAAGATGGACCTTAATGGGGATGATGAAAAGGACAACATAAAAAAATTTGGGGTGCTGTGGATGCATAGAGTTAAGAGGATTGACTGGGTACTTCCAGTTGGAACTTCCTTGACTGTTGTTGGTGAGGCTGCTAAAGATGATGTCGGGGTCATTCGCATTCAGCGACCCTACAAAGGGCCATATTATGTCTCTCCCAAAACGATTGATCAACTCATTGCCAACCCTGGGTACAAGGGCCCATGGAAAGCAAAGAAAATTAAGAACCCATCTTCCTCACAAGACAAAATCTCCCTGCATCAGGTTCTGCTCCGTTCATCTCCTTCTTCCCAGGATCAACAACCTCCTACCTTTTCAAGACAAGCAAATGAAGTCGCAGGATGGGAGTTAGCATTTGTTACAGCTCCTAGTGCAAATGAGAGTGCTGCCGCGTCTAACAAACTGGTTGGAGGATTGGACAAGTTTACACTAGACGACCTCCATAATGATGCATCAGGAGTCAGACTTCATGCAGGCCGGTTATTGTCGGTGGCCTGTTGGGATGCATGA 840 0.4726 MSDHSLFTQTRGSFVSMLFESMRGTCTSASRELPHTAASFKLKLSIHTLQSTPSCKGKVGEESDIFKIVRMTIQRQYDPMILFGFGKRECELLAMQMEKMDLNGDDEKDNIKKFGVLWMHRVKRIDWVLPVGTSLTVVGEAAKDDVGVIRIQRPYKGPYYVSPKTIDQLIANPGYKGPWKAKKIKNPSSSQDKISLHQVLLRSSPSSQDQQPPTFSRQANEVAGWELAFVTAPSANESAAASNKLVGGLDKFTLDDLHNDASGVRLHAGRLLSVACWDA* 280
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g01569 279 PANTHER - 115 174 IPR044231 GO:0004842|GO:0016567
Rops3g01569 279 Pfam E3 Ubiquitin ligase 122 172 IPR022170 GO:0004842|GO:0006996|GO:0016567
Rops3g01569 279 Gene3D - 4 149 IPR027417 -
Rops3g01569 279 SUPERFAMILY P-domain of calnexin/calreticulin 156 188 IPR009033 GO:0005509|GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g01569 Rops-Chr3 23919159 23920269 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops3g01569 117 174 C3H Transcription Factor Family AT1G63900 62.069 6.29e-17 77.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g01569 K12598 K15688 ming:122059927 98.2117