Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g01568 ATGGAACTTTCCATCCAAGAAGGAGAAATCCCAATCCCAATAAACAGTACTTATGGTGGGGGACATGGGAATGTTCATGGACAGGGACATGGTCACATGATTCATGATGACCCTCCTCCACACCATAACCACATTATATCTTCCTCAACACCCCAAAACCCTTCAAATGGCTCTTCAATGCAAGCAGGCCTAGAGGATCAAGGACATGGACCCTATAAGAAAGTGGTGAGGTACAGAGAATGCCTAAAGAACCATGCAGCTGCTATGGGAGGAAATGCCACTGATGGTTGTGGTGAGTTCATGCCAAGTGGTGAAGAAGGGACCATAGAGGCACTTAACTGCTCAGCCTTCCATTGTCACAGAAACTTCCACAGAAAAGAAGATGAAGGTGAACCCTCCCCATGTGACTACCACCATACTAGCTCACATTTCATGAGTTTTAAATGTTCATTTCAGCAAACTCGTGAATTATAG 474 0.4494 MELSIQEGEIPIPINSTYGGGHGNVHGQGHGHMIHDDPPPHHNHIISSSTPQNPSNGSSMQAGLEDQGHGPYKKVVRYRECLKNHAAAMGGNATDGCGEFMPSGEEGTIEALNCSAFHCHRNFHRKEDEGEPSPCDYHHTSSHFMSFKCSFQQTREL* 158
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g01568 157 MobiDBLite consensus disorder prediction 1 69 - -
Rops3g01568 157 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 78 127 IPR006456 -
Rops3g01568 157 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 52 138 - -
Rops3g01568 157 Pfam ZF-HD protein dimerisation region 76 128 IPR006456 -
Rops3g01568 157 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 77 127 IPR006456 -
Rops3g01568 157 MobiDBLite consensus disorder prediction 43 63 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g01568 Rops-Chr3 23870177 23870650 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops3g01568 1 131 ZF-HD Transcription Factor Family AT1G14440 48.951 6.41e-34 119
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Rops3g01568 ZF-HD_dimer 4.5e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g01568 - - qsu:112015870 210.69