Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g01567 ATGTATCCTCAATCGAACAGTAGGATCGATTTCTCGGTAGGTGACAAGGTTGAGGTAAAAAGCGACGAAGAGGGGTTTCTAGGTTCCTACTACAAGGCCTCCATTGTAGAATGCCTTGAGAATGGTCGATATGTGGTGCAATACAAGAACCTTTTGGAAGAGGATAAGTCTAAGCCTCTCACTGAGGTCCTTTTACCAAAGGTGCTTCGTCCCGTCCCACCACGTGTGCGTACTTCAAAGTTCAAAATGTGGCAATTTGTCGATGCTTTCGACAATGACGGTTGGTGGTATGGAAAGATTATTGGGAAAAATGGTTCTCGCTACACGGTGCAGTTCCACTTCCAAGATGAAGTTAAAGAATACCATTCCTCACGTATCAGGGTTCACCATGAGTGGAGTAGTGGGAAATGGTTTTTGTTTGGTTAA 426 0.4437 MYPQSNSRIDFSVGDKVEVKSDEEGFLGSYYKASIVECLENGRYVVQYKNLLEEDKSKPLTEVLLPKVLRPVPPRVRTSKFKMWQFVDAFDNDGWWYGKIIGKNGSRYTVQFHFQDEVKEYHSSRIRVHHEWSSGKWFLFG* 142
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g01567 141 CDD Tudor_Agenet_AtDUF_rpt1_3 11 74 - -
Rops3g01567 141 SMART agenet_At_2 9 77 IPR014002 -
Rops3g01567 141 SMART agenet_At_2 79 134 IPR014002 -
Rops3g01567 141 Pfam Agenet domain 14 74 IPR008395 -
Rops3g01567 141 PANTHER AGENET DOMAIN-CONTAINING PROTEIN-RELATED 10 138 - -
Rops3g01567 141 Gene3D - 1 81 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g01567 Rops-Chr3 23849019 23849444 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops3g01567 20 135 PHD Transcription Factor Family AT5G58610 28.058 1.57e-08 50.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g01567 - - gmx:106794115 155.606