Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g01555 ATGACAAAGAACAGAACAGCTCCTATTCCATCATTCCAAGTGGAAGCTTTTGATTGGAGCTATGGCATTCATGGAGATGCCCCTAAGAGAATTAGTGATGGTTTTCAAGTAAACAATGGTGAAATAGGAAGTGGGTATGGTTCATCTTTCTCTGTGGTTTTGGATAGGGAGAGAGGGGGACTTGTGGAGGCACCTGCCAAATTGGAAAGAAAGGGTGTGTCCACTGAGAGAAGCATTGAAGCTTTGAAGAGCCATAGTGAGGCAGAGAGGAAGAGGAGAGCTAGGATTAATGCACATCTTGATACACTTCGCAGTGTGGTTCCAGGTGCTATGAGGATGGACAAAGCATCATTATTTGGTGAGGTTGTTAGACATTTGCAAGAGCTGAAAAGGAATGCAACACAAGCTTGTGAAGGTTTAATGATACCAAAGGACAACGATGAAATAAGTGTTGAAGAACAAGAGGGTGGGTTGAATGGTTTTCCTTATTCAATTAGAGCATCACTATGTTGTGAATATAAACCTGGGTTATTGTCTAATATAAGACAAGCACTAGATGCTCTTCATCTTATGATAATGAAGGCTGATATTGCAACATTGGGAGGAAGAATGAAGAATGTGTTTGTGATAATTAGCTGCAAAGAACAGAACTTAGAAGATGCTGAATACCGTCAGTTTCTTGCTGGTTCTGTTCACCAAGCTCTTAGGTCTATACTCGATAGATTTTCTGTTTCACAGGACATCTTAGGAACCAGAAAAAGAAGGAGGATTTCTATATTCAGTTCATCATCTTTAGAAGAATTTTTATAA 810 0.3975 MTKNRTAPIPSFQVEAFDWSYGIHGDAPKRISDGFQVNNGEIGSGYGSSFSVVLDRERGGLVEAPAKLERKGVSTERSIEALKSHSEAERKRRARINAHLDTLRSVVPGAMRMDKASLFGEVVRHLQELKRNATQACEGLMIPKDNDEISVEEQEGGLNGFPYSIRASLCCEYKPGLLSNIRQALDALHLMIMKADIATLGGRMKNVFVIISCKEQNLEDAEYRQFLAGSVHQALRSILDRFSVSQDILGTRKRRRISIFSSSSLEEFL* 270
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g01555 269 Gene3D - 75 137 IPR036638 GO:0046983
Rops3g01555 269 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 80 129 IPR011598 GO:0046983
Rops3g01555 269 PANTHER TRANSCRIPTION FACTOR BHLH30 69 261 IPR045847 GO:0003700|GO:0006355
Rops3g01555 269 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 84 133 IPR036638 GO:0046983
Rops3g01555 269 CDD ACT_UUR-ACR-like 168 210 - -
Rops3g01555 269 Pfam Helix-loop-helix DNA-binding domain 84 129 IPR011598 GO:0046983
Rops3g01555 269 SMART finulus 86 135 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g01555 Rops-Chr3 23690339 23692106 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops3g01555 60 267 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G68810 36.792 1.40e-33 123
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Rops3g01555 HLH 1.9e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g01555 - - aprc:113859663 412.149