Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g01546 ATGCTCGTTGGACGTGTTGAGTCTGGGACCTTGAACCCTGGTATGGTCGTGACTTTCGGAACCATTGGGTTGGCTACTGAAGCTATGTCCATGGAGATGCACCACGAGGCTCTCCAAGAAGCTCGTCCAGGTGACAATAGGGGTTTCAACGTGAAGAACGTTGCACTCAAGGACCTCAAGCATGGTTTTGTTGCACCAGACTCAAAGGATGACCTTGTCAAGGAAGCTGCTGAAATGAATAAGAGGTCATTTAAGTGTGCGTGGGTGCTTGACAAGCTTAAGGTTGAGCGTGAAAGAGGGATTACCATTGATATTGCATTGTGGAAGTTTGAGACCACCAAATACTACTGCACTGTCATTGATGCTCCGAGGCACATGGGTTTCATTAGGAGTATGACTATTGGGACCCCCCCAAGCACTGTGCTACCATGCTAA 435 0.4828 MLVGRVESGTLNPGMVVTFGTIGLATEAMSMEMHHEALQEARPGDNRGFNVKNVALKDLKHGFVAPDSKDDLVKEAAEMNKRSFKCAWVLDKLKVERERGITIDIALWKFETTKYYCTVIDAPRHMGFIRSMTIGTPPSTVLPC* 145
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g01546 144 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 67 136 IPR027417 -
Rops3g01546 144 ProSitePatterns Translational (tr)-type guanine nucleotide-binding (G) domain signature. 91 106 IPR031157 -
Rops3g01546 144 SUPERFAMILY Translation proteins 2 66 IPR009000 -
Rops3g01546 144 Gene3D - 62 139 IPR027417 -
Rops3g01546 144 PANTHER TRANSLATION FACTOR 73 136 - -
Rops3g01546 144 Pfam Elongation factor Tu domain 2 3 64 IPR004161 GO:0005525
Rops3g01546 144 Gene3D Translation factors 1 61 - -
Rops3g01546 144 Pfam Elongation factor Tu GTP binding domain 72 135 IPR000795 GO:0003924|GO:0005525
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g01546 Rops-Chr3 23516754 23517188 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops3g01546 74 136 Eukaryotic Initiation Factors Gene Family AT1G07930 85.714 3.69e-32 115
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g01546 K03231 - mus:103969643 119.012