Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g01542 ATGCTCGGATTCTTCCTGCTCCATAGAGAGAAAGAATACTTACCACAAGTTGGTCAGTGGAACATGATGAACAAGAAAGTTATAAATGGAAGCACCATACGATATTGGACATGTATCAATTTCTCACGAAGTGTCCAAGAGAGTACAGCTCGTGGATTTTGCCAACAATTAGTTCAGATGTGCCAAATCTCAGGCATGGAATTTAGTCAGGACCCTGTGATTCCCATATATTCAGCAAGACCAAATTTGGTAAAAAAGGCCTTGAAGTATGTACATTCTGCTGCTCTAGATAAACTTGGTGGGAAAGAGCTAGAGTTACTGAATTCTATTCTTCCAGATAACAATGGCTCTCTCTATGGTATGATTCCAAGTCACTCCATTAGTTATGTCCAGCATATTATCTAG 405 0.3951 MLGFFLLHREKEYLPQVGQWNMMNKKVINGSTIRYWTCINFSRSVQESTARGFCQQLVQMCQISGMEFSQDPVIPIYSARPNLVKKALKYVHSAALDKLGGKELELLNSILPDNNGSLYGMIPSHSISYVQHII* 135
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g01542 134 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 14 122 - -
Rops3g01542 134 Pfam Mid domain of argonaute 15 92 IPR032473 -
Rops3g01542 134 Gene3D - 6 127 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g01542 Rops-Chr3 23440029 23441150 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops3g01542 9 120 Eukaryotic Initiation Factors Gene Family AT5G43810 69.643 1.68e-52 175
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g01542 K11593 - gmx:100798086 210.69