Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g01541 ATGTTTAGCTACATATCAATTGGGAGGTTTCTCTATTCTCCGGATTTAAGAAAACCACAACAGCTGGGTGGTGGCCTAGAATCATGGCATGGTTTCTACCAAAGTATAAGGCCTACTCATATAGGATTGTCCCTTAATATTGACATGTCATCAATGGCGTTTATAGAGCCACTCCCTGTAATTGACTTTGTTGCTCAAATTTTGGGAAAAGATGCGTATTCAAAGGCATTGTCAGATGTAGATCATGTCAAGATTAAGAAAGCCTTAAGAGGTGTAAAAGTTGAAGTTACACAGAGGAAGTTTTCGAAGGAAGTACAGGATAACAAGATTGACATCTCAACCTACAAGGGAGCTCAAGTATGGCTTTGTAACTTTTGCATTGCAAGTTGGACTTACATTTTTTTAGATATGACATCTCAGGAAATGATTGTCTCTTTTTCCCCTCCTAATAGTTTCCCTCTCGTTGAGAAAATGACCATGAAATCAGTAGTTGATTACTTTCAAGAAATGTATGGATATACAATCATATATACTCATCTACCCTGTCTTCAAGTAGGAAGCCAAAAGAAGGTGAACTATTTGCCCATGGAGGCATGCAAGATAGTTGGGGGTCAGAGATATACAAAAAAGCTTAATGAAAAGTAG 645 0.3783 MFSYISIGRFLYSPDLRKPQQLGGGLESWHGFYQSIRPTHIGLSLNIDMSSMAFIEPLPVIDFVAQILGKDAYSKALSDVDHVKIKKALRGVKVEVTQRKFSKEVQDNKIDISTYKGAQVWLCNFCIASWTYIFLDMTSQEMIVSFSPPNSFPLVEKMTMKSVVDYFQEMYGYTIIYTHLPCLQVGSQKKVNYLPMEACKIVGGQRYTKKLNEK* 215
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g01541 214 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 7 214 - -
Rops3g01541 214 Gene3D paz domain 52 207 - -
Rops3g01541 214 Pfam Argonaute linker 1 domain 6 55 IPR014811 -
Rops3g01541 214 SMART DUF1785_2 5 57 IPR014811 -
Rops3g01541 214 Pfam PAZ domain 147 211 IPR003100 GO:0005515
Rops3g01541 214 SUPERFAMILY PAZ domain 53 213 IPR036085 GO:0005515
Rops3g01541 214 CDD PAZ_argonaute_like 57 202 - -
Rops3g01541 214 ProSiteProfiles PAZ domain profile. 147 203 IPR003100 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g01541 Rops-Chr3 23438720 23440082 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops3g01541 4 214 Eukaryotic Initiation Factors Gene Family AT5G43810 57.820 9.12e-74 238
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g01541 K11593 - gmx:100808457 276.174