Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g01538 ATGGGTATGAGAAGCACTGTAGGAGAGATTGTTCAAGTAGAAGGAGGGCACATTGTTAGAGCCACAGGTAGAAAAGATAGACACAGCAAGGTTTACACTTCCAAAGGTCCTCGTGATCGCAGGGTTAGACTCTCAGCTCACACAGCCATTGAGTTCTATGATGTTCAAGACCGTCTTGGTTATGACAGACCCAGCAAAGCTGTAGATTGGCTCATCAAGAAGGCAAAGTCTTCCATTGACAAGCTTGATGAGCTTCCTCCATGGAATCCAATTGCTGAAAATCAAAACATTGAAGTTAATAAGGAGAAAGAGCATAATGCAGGCTCAATTGGTATAGCCACTGGAGAACAATCAGAACCTTCTTTTTACAATTTTCAGGTCCAAAGGCAATTAGGTGAGAACCCAGGTAACCATTCAGCTTTTGTTTCACCACATGTTGACACTGACCCCATAACTTTCTTTCCCACAACCTCTGCTACTTCTTCTTCCGTCAATTTTCATAGCTACCCACCTGATATAATCTCAAGAACCAACAACTCCTCAGAAGATCTTGGCCTCTCTCTTCATTTGTTCCAAAACCACCCTGGTCTTATTCCTTGGCAATCACAACAAGAAGGTACTAATAACACACCTTCAAATGAAAACCAAAGCCTTTTTGCTGGCTCAAATCTCATTGGCTTTGAGAACCATTATCAGAGAATTGTGACTTGGAACAATGAAGCAAACACTGATCATGTAAACAAAGTGGGGTTCATGGTCAACTCTCAGCCATTTTTAGGCCAAGGTTCAGGTTCAGGTTCAGCATATTCTCAAAGTGAGACCCTTCAGTCCAATTTTTCACCTTCAGTTAGATCTTGGAATGACATTCCAACTGCTTCCTCGGAGCATCAAAAGTCCCAACCACTTCACCAAGCTTCAATCTTTGGCAGCAGGTTTCTTTCTGATGGATTGGTTGGGTTCTGCATTCCAGATAGAATTCAGGAAGAGAATCACGGAATTGCTTCAAACAATCCATCTTCTTCTTCTCCTAGTTCTCACCAGTGA 1044 0.4234 MGMRSTVGEIVQVEGGHIVRATGRKDRHSKVYTSKGPRDRRVRLSAHTAIEFYDVQDRLGYDRPSKAVDWLIKKAKSSIDKLDELPPWNPIAENQNIEVNKEKEHNAGSIGIATGEQSEPSFYNFQVQRQLGENPGNHSAFVSPHVDTDPITFFPTTSATSSSVNFHSYPPDIISRTNNSSEDLGLSLHLFQNHPGLIPWQSQQEGTNNTPSNENQSLFAGSNLIGFENHYQRIVTWNNEANTDHVNKVGFMVNSQPFLGQGSGSGSAYSQSETLQSNFSPSVRSWNDIPTASSEHQKSQPLHQASIFGSRFLSDGLVGFCIPDRIQEENHGIASNNPSSSSPSSHQ* 348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g01538 347 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 20 277 IPR005333 GO:0003700
Rops3g01538 347 ProSiteProfiles TCP domain profile. 24 82 IPR017887 -
Rops3g01538 347 Pfam TCP family transcription factor 23 118 IPR017887 -
Rops3g01538 347 MobiDBLite consensus disorder prediction 279 301 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g01538 Rops-Chr3 23387234 23391094 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops3g01538 7 342 TCP Transcription Factor Family AT3G15030 43.003 3.43e-67 215
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Rops3g01538 TCP 2.8e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g01538 - - gmx:100814907 425.246