Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g01537 ATGATGGAGTGTGTTGTTTGTTTGAGTGGTTTCGAAGATGAAAAAATGGCAAAGTTGCTCCCAAATTGTAAGCATTACTTTCATGTTGATTGTATTGATATGTGGTTGGCTTCACACTCCGCGTGTCCCGTGTGTCGAGCCATTGTTCAACCACGGCTTGAGCCACAAGTCCGTGAGGGTGGTGCACCCTTGATGATACTTCCCGTGTTGGAACCACGCTCGGAAGGCACGTCAAATGGTGGGGTTGGTGAGGAACACAAAATTGATGGTTCGAATTCAAGGATAAGCTCGTTCAAAAATGTTCTTAGGAGGGAAAGATCATCAAAAGGAATCCACCAAGATGATGTTAATGAAGATTTGGAGAGATGA 369 0.4444 MMECVVCLSGFEDEKMAKLLPNCKHYFHVDCIDMWLASHSACPVCRAIVQPRLEPQVREGGAPLMILPVLEPRSEGTSNGGVGEEHKIDGSNSRISSFKNVLRRERSSKGIHQDDVNEDLER* 123
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g01537 122 SMART ring_2 4 45 IPR001841 -
Rops3g01537 122 SUPERFAMILY RING/U-box 3 52 - -
Rops3g01537 122 MobiDBLite consensus disorder prediction 99 122 - -
Rops3g01537 122 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 52 IPR013083 -
Rops3g01537 122 ProSiteProfiles Zinc finger RING-type profile. 4 46 IPR001841 -
Rops3g01537 122 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 2 57 - -
Rops3g01537 122 MobiDBLite consensus disorder prediction 70 122 - -
Rops3g01537 122 CDD RING-H2_EL5-like 3 46 - -
Rops3g01537 122 Pfam Ring finger domain 3 46 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g01537 Rops-Chr3 23343174 23343542 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops3g01537 3 122 C3H Transcription Factor Family AT2G42360 43.077 3.36e-27 99.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g01537 K19038 - gmx:100783358 137.117