Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g01535 ATGTTACTACCCATGCTTGCTTTATCAATAGTTTCTGTCATTCTCTTAGCATTTTTTTACCTCTACACAATATATCTCCTCCGAACATTCCCACCTCGCAACAGAGCTAACACCATTAATCGATTGAGCCTCACCCGTCTTCATGATCACACCCTACCACGAACCACAGGGCTCGACCCAGCCCTCTTGGCATCACTACCTGTGTCCGTAGTTGAACCGAAAGTTCAAGAAGCTCATGGTGGTGGTGTGATGGAGTGTGTTGTTTGTTTGAGTGGTTTTGAAGATGAAGAAAAGGCAAAGTTGCTTCCAAATTGTGAGCATTATTTTCATGTTGAGTGTATTGATATGTGGTTGGCTTCGCACTCCACCTCTCCCTTGTGTCGAGCCATGGTTCAACCACGGCTTGAGCCACAGGTTCGTGAGGGTCCAAGGACCCTGGCTCTTGATGGTGCACCCTTGGTTGTCCTACCCGTGTTGGAACCAAACTCAGAAGGCACATCTAATGGTGGGGTCCGAATTCAAGGCTAG 528 0.4754 MLLPMLALSIVSVILLAFFYLYTIYLLRTFPPRNRANTINRLSLTRLHDHTLPRTTGLDPALLASLPVSVVEPKVQEAHGGGVMECVVCLSGFEDEEKAKLLPNCEHYFHVECIDMWLASHSTSPLCRAMVQPRLEPQVREGPRTLALDGAPLVVLPVLEPNSEGTSNGGVRIQG* 176
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g01535 175 ProSiteProfiles Zinc finger RING-type profile. 86 128 IPR001841 -
Rops3g01535 175 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 10 136 - -
Rops3g01535 175 FunFam E3 ubiquitin-protein ligase ATL6 47 134 - -
Rops3g01535 175 SUPERFAMILY RING/U-box 85 134 - -
Rops3g01535 175 SMART ring_2 86 127 IPR001841 -
Rops3g01535 175 CDD RING-H2_EL5-like 85 128 - -
Rops3g01535 175 Pfam Ring finger domain 85 128 IPR001841 -
Rops3g01535 175 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 61 135 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g01535 Rops-Chr3 23301568 23302095 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops3g01535 1 143 C3H Transcription Factor Family AT2G42360 40.000 5.88e-27 100
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g01535 K19038 - gmx:100783358 150.984