Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g01531 ATGGATTTGATGAACAATAATCACAACCATGAGGACCCATTTGGTAAACCAGTCCAAAGCTTGTTGAACAAAAAACTCATGTTGGTATCCATGGTTGCTTTATCAGTAGTGTCTGTCATTCTCTTTGCATTTTACCTCTACACAATACATGTCCTCCGAACATCTCGTCACAGAGCTAACACAATTAATCGATTGAGCCTTACTCGTCTTCATGATCACACCTCACAAACCACAGGGCTCGACCCTGCCCTTGTGGCATCATTGCCTGTGTTCATAGTTGAACCGAAAGCCGGAGAAGCTCGTCGTGGTGGTGTGATAGAGTGTGTTGTTTGTTTGAGTGGTTTTGAAGATGAAAAAAAGGCAAAGTTGCTTCCAAATTGTAAGCATTATTTTCATGTTGATTGTATTGATATGTGGTTGGCTTCACACTCCACGTGTCCCTTGTGTCGAGCCATGGTTCAACCACGGCTTGAGCCACAGGTCCGTGAGGGTCCAAGGACCTTGGCTCTTGATGGTGCATCCTTGGTCGTCCTACCCGTGTTGGAACCAAACTCAGAAGGCACATCGAATGGTGGGGTTGGTTTGGAACACACAATTGATGGTTCGAATTCAAGATTGAGCTCGTTCAAAAATGTTCTTAGGAGGGAAAGATCATCAAGCAGAGTCCACCAAGATGATGTTAATGAAGATTTGGAGAGATGA 702 0.443 MDLMNNNHNHEDPFGKPVQSLLNKKLMLVSMVALSVVSVILFAFYLYTIHVLRTSRHRANTINRLSLTRLHDHTSQTTGLDPALVASLPVFIVEPKAGEARRGGVIECVVCLSGFEDEKKAKLLPNCKHYFHVDCIDMWLASHSTCPLCRAMVQPRLEPQVREGPRTLALDGASLVVLPVLEPNSEGTSNGGVGLEHTIDGSNSRLSSFKNVLRRERSSSRVHQDDVNEDLER* 234
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g01531 233 ProSiteProfiles Zinc finger RING-type profile. 108 150 IPR001841 -
Rops3g01531 233 SUPERFAMILY RING/U-box 107 156 - -
Rops3g01531 233 CDD RING-H2_EL5-like 107 150 - -
Rops3g01531 233 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 8 163 - -
Rops3g01531 233 Pfam Ring finger domain 107 150 IPR001841 -
Rops3g01531 233 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 66 156 IPR013083 -
Rops3g01531 233 SMART ring_2 108 149 IPR001841 -
Rops3g01531 233 FunFam E3 ubiquitin-protein ligase ATL6 68 156 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g01531 Rops-Chr3 23208562 23209263 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops3g01531 7 233 C3H Transcription Factor Family AT2G42360 41.453 5.35e-46 151
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g01531 K19038 - gmx:100783358 204.912