Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Rops3g01530 | ATGGATTTCTTGAACAATGATCAAAACCATCAAGACCCATTTGGTGAACCAGTCCACAGCTTGTTAAACAACAAGCTCATGTTGCTATCCATGCTTGCTTTATCAATAGTGTCTGTCATTCTCTTAGCACTTTACCTCTACACAATACATCTCCTCCGAGCATCCCCACCTCGCCACAGAGCTAACACCATTAACCGATTGAGCCTTACCCGTCTTCAAGATCACACCCTACCACAAACCACAGGGCTCGACCCTGCCCTCGTGGCATCATTGCCCGTGTTCATAGTCAAACCGAAAGTTGGAGAAGCTCGTGGTGATGGTGTAATGGAGTGTGTTGTTTGTTTGGGTGGTTTTGAAGATGAAAAAAAGGCAAAGTTGCTTCCAAATTGTAAGCATTATTTTCATGTTGATTGTATTGATATGTGGTTGGCTTCACACTCCACATGTCCCTTGTGTCGAGCCATGGTTCAACCACGGCTTGAACCACAGATCCGTGAGGGTCCAAGGACCTTGGCTCTTGATGGTGCACCCTTGGTTGTCGTCCTACCCGTGTCGGAACCAAACTCAGAAGGCACATCGAATGGTGGGGTTGGTGAGGAACACACAATTGATGGTTCGAATTCAAGGTTGAGCTCGTTCAAAAATGTTCTTAGGAGGGAAAGATCATCAAGAAGAATCCACCATGATGACGTTAATGAAGATCCGGAGAGGTGA | 714 | 0.4608 | MDFLNNDQNHQDPFGEPVHSLLNNKLMLLSMLALSIVSVILLALYLYTIHLLRASPPRHRANTINRLSLTRLQDHTLPQTTGLDPALVASLPVFIVKPKVGEARGDGVMECVVCLGGFEDEKKAKLLPNCKHYFHVDCIDMWLASHSTCPLCRAMVQPRLEPQIREGPRTLALDGAPLVVVLPVSEPNSEGTSNGGVGEEHTIDGSNSRLSSFKNVLRRERSSRRIHHDDVNEDPER* | 238 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Rops3g01530 | 237 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 70 | 159 | IPR013083 | - | |
Rops3g01530 | 237 | CDD | RING-H2_EL5-like | 110 | 153 | - | - | |
Rops3g01530 | 237 | ProSiteProfiles | Zinc finger RING-type profile. | 111 | 153 | IPR001841 | - | |
Rops3g01530 | 237 | MobiDBLite | consensus disorder prediction | 214 | 237 | - | - | |
Rops3g01530 | 237 | MobiDBLite | consensus disorder prediction | 185 | 237 | - | - | |
Rops3g01530 | 237 | Pfam | Ring finger domain | 110 | 153 | IPR001841 | - | |
Rops3g01530 | 237 | FunFam | E3 ubiquitin-protein ligase ATL6 | 71 | 159 | - | - | |
Rops3g01530 | 237 | SMART | ring_2 | 111 | 152 | IPR001841 | - | |
Rops3g01530 | 237 | MobiDBLite | consensus disorder prediction | 186 | 213 | - | - | |
Rops3g01530 | 237 | SUPERFAMILY | RING/U-box | 110 | 159 | - | - | |
Rops3g01530 | 237 | PANTHER | E3 UBIQUITIN-PROTEIN LIGASE ATL42 | 12 | 164 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Rops3g01530 | Rops-Chr3 | 23195824 | 23196537 | Tandem |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Rops3g01530 | 7 | 234 | C3H Transcription Factor Family | AT2G42360 | 38.696 | 1.42e-43 | 145 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Rops3g01530 | K19038 | - | gmx:100783358 | 196.052 |