Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g01530 ATGGATTTCTTGAACAATGATCAAAACCATCAAGACCCATTTGGTGAACCAGTCCACAGCTTGTTAAACAACAAGCTCATGTTGCTATCCATGCTTGCTTTATCAATAGTGTCTGTCATTCTCTTAGCACTTTACCTCTACACAATACATCTCCTCCGAGCATCCCCACCTCGCCACAGAGCTAACACCATTAACCGATTGAGCCTTACCCGTCTTCAAGATCACACCCTACCACAAACCACAGGGCTCGACCCTGCCCTCGTGGCATCATTGCCCGTGTTCATAGTCAAACCGAAAGTTGGAGAAGCTCGTGGTGATGGTGTAATGGAGTGTGTTGTTTGTTTGGGTGGTTTTGAAGATGAAAAAAAGGCAAAGTTGCTTCCAAATTGTAAGCATTATTTTCATGTTGATTGTATTGATATGTGGTTGGCTTCACACTCCACATGTCCCTTGTGTCGAGCCATGGTTCAACCACGGCTTGAACCACAGATCCGTGAGGGTCCAAGGACCTTGGCTCTTGATGGTGCACCCTTGGTTGTCGTCCTACCCGTGTCGGAACCAAACTCAGAAGGCACATCGAATGGTGGGGTTGGTGAGGAACACACAATTGATGGTTCGAATTCAAGGTTGAGCTCGTTCAAAAATGTTCTTAGGAGGGAAAGATCATCAAGAAGAATCCACCATGATGACGTTAATGAAGATCCGGAGAGGTGA 714 0.4608 MDFLNNDQNHQDPFGEPVHSLLNNKLMLLSMLALSIVSVILLALYLYTIHLLRASPPRHRANTINRLSLTRLQDHTLPQTTGLDPALVASLPVFIVKPKVGEARGDGVMECVVCLGGFEDEKKAKLLPNCKHYFHVDCIDMWLASHSTCPLCRAMVQPRLEPQIREGPRTLALDGAPLVVVLPVSEPNSEGTSNGGVGEEHTIDGSNSRLSSFKNVLRRERSSRRIHHDDVNEDPER* 238
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Rops3g01530 237 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 70 159 IPR013083 -
Rops3g01530 237 CDD RING-H2_EL5-like 110 153 - -
Rops3g01530 237 ProSiteProfiles Zinc finger RING-type profile. 111 153 IPR001841 -
Rops3g01530 237 MobiDBLite consensus disorder prediction 214 237 - -
Rops3g01530 237 MobiDBLite consensus disorder prediction 185 237 - -
Rops3g01530 237 Pfam Ring finger domain 110 153 IPR001841 -
Rops3g01530 237 FunFam E3 ubiquitin-protein ligase ATL6 71 159 - -
Rops3g01530 237 SMART ring_2 111 152 IPR001841 -
Rops3g01530 237 MobiDBLite consensus disorder prediction 186 213 - -
Rops3g01530 237 SUPERFAMILY RING/U-box 110 159 - -
Rops3g01530 237 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 12 164 - -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Rops3g01530 Rops-Chr3 23195824 23196537 Tandem
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops3g01530 7 234 C3H Transcription Factor Family AT2G42360 38.696 1.42e-43 145
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g01530 K19038 - gmx:100783358 196.052