Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g01529 ATGGATGTCTTTGATAATGGTCATAACCATGAGGGCCCATTTGATGAAACATTCCTCAATGAGTTGAATAAAAAGATCATATTGGTATCCATGGTTTCATTGTCAATACTCTTGCTTCTAGTCTTCTCACTTTACCTCTACAACCGACATGTCCTCCAAACACGTCAATCTCGAAGAAGAGCAAACATTATTAACCGATTAAGCCTCACCTTGTTTTATGATCACACCCTACCACCAATCATAGGGCTCGACCCTGCCCTTGTGGCGACACTACCCGTGTACATCGTAGAATCGAAAGTTCGAGAAGCTCATGGTGGTGGTGTGATGGAGTGCGTTGTATGCTTGAGTGGTTTTGAAGATGAAGAAATAGTAAAGTTGCTTCCCAATTGTGAGCATTATTTTCATGTTCAATGTATTGATACCTGGTTGGCTTCGCACTCCACGTGTCCCTTGTGTCGAACTTGGGTCCCACCACGGCTTGAGCTACATGAGGGTTCTACAACCATGACTCTTGATGATGCACCCTCGATGGTTCTACCCATGTTGGAACCCACATTGGAAGGCACATCAGATGGCGGGCAAAACAAAATTGAGGGTTCGAACTCACCAATGAGCTCGTTCCGAAATGTTCCTAGTAGGGAAAGTTCGTCAAGAAGAAGCCACTTATCTTCGCATGATGATGTTGATGAAGATTTAGAGAGATGA 705 0.4397 MDVFDNGHNHEGPFDETFLNELNKKIILVSMVSLSILLLLVFSLYLYNRHVLQTRQSRRRANIINRLSLTLFYDHTLPPIIGLDPALVATLPVYIVESKVREAHGGGVMECVVCLSGFEDEEIVKLLPNCEHYFHVQCIDTWLASHSTCPLCRTWVPPRLELHEGSTTMTLDDAPSMVLPMLEPTLEGTSDGGQNKIEGSNSPMSSFRNVPSRESSSRRSHLSSHDDVDEDLER* 235
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g01529 234 CDD RING-H2_EL5-like 110 153 - -
Rops3g01529 234 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 88 158 IPR013083 -
Rops3g01529 234 MobiDBLite consensus disorder prediction 188 213 - -
Rops3g01529 234 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 22 169 - -
Rops3g01529 234 SUPERFAMILY RING/U-box 110 160 - -
Rops3g01529 234 Pfam Ring finger domain 110 153 IPR001841 -
Rops3g01529 234 MobiDBLite consensus disorder prediction 214 234 - -
Rops3g01529 234 SMART ring_2 111 152 IPR001841 -
Rops3g01529 234 MobiDBLite consensus disorder prediction 183 234 - -
Rops3g01529 234 ProSiteProfiles Zinc finger RING-type profile. 111 153 IPR001841 -
Rops3g01529 234 FunFam E3 ubiquitin-protein ligase ATL6 78 158 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g01529 Rops-Chr3 23179589 23180293 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops3g01529 4 234 C3H Transcription Factor Family AT2G42360 35.593 1.84e-39 134
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g01529 K19038 - gmx:100783358 174.866