Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g01526 ATGAACCGATTCAGCCTCACCCTTCTCCATGATCACACCCCGCCAACCACAGGGCTCGACCCTACCCTAGTGGCAGCTCTGCCCATGTTCATCGTAGAACCGAAAGTTCGAGAAGCTCATGGTGGTGGTGCGATAGAGTGTGTTGTATGTTTGAGTGATTTTGAAGATGAAGATGTGGCAAAGTTGCTTCCAAATTGTGAGCATTATTTTCATGTTGACTGTATTGATACATGGCTGGCTTCACACTCCACGTGTCCCTTGTGTCGAGCCATGGTTCAACCACGGCTTCAGCCACAGGTCCGTGAGGGTCCAATGACCCTGGCTCTTGATGCTAACTATAATTCATTGCAAGCTATCAACTTGGAAGGGAACCCTTGTCAAAAAAATGTTGGAGAAAAGCAACTGAAGAAATATCTGCAAGGCCTTCTTCCCTATCTTGTCTACTACAATAGGCAACCTATCAAAGTGAGCACTTTGAAGGATGGTGCAGATCGTGCAGTTCGGTTAAGAATGAATTCCCAACAATTTGATCGCGACCTTAGAATGGATCGTAAGGCTACAAGGAAGAGCAGCCATGCTGTTGTAGCGGCTCGAAGGTCATCATCATCATCTTCCTCTTATGCTCACAGAAGTCAAACTGTTGACTCATTAAAACCATCCAAAGGAAAGTGA 672 0.4598 MNRFSLTLLHDHTPPTTGLDPTLVAALPMFIVEPKVREAHGGGAIECVVCLSDFEDEDVAKLLPNCEHYFHVDCIDTWLASHSTCPLCRAMVQPRLQPQVREGPMTLALDANYNSLQAINLEGNPCQKNVGEKQLKKYLQGLLPYLVYYNRQPIKVSTLKDGADRAVRLRMNSQQFDRDLRMDRKATRKSSHAVVAARRSSSSSSSYAHRSQTVDSLKPSKGK* 224
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g01526 223 SMART ring_2 47 88 IPR001841 -
Rops3g01526 223 MobiDBLite consensus disorder prediction 179 223 - -
Rops3g01526 223 CDD RING-H2_EL5-like 46 89 - -
Rops3g01526 223 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 16 195 - -
Rops3g01526 223 SUPERFAMILY RING/U-box 41 95 - -
Rops3g01526 223 FunFam E3 ubiquitin-protein ligase ATL6 9 95 - -
Rops3g01526 223 Pfam Ring finger domain 46 89 IPR001841 -
Rops3g01526 223 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 23 96 IPR013083 -
Rops3g01526 223 ProSiteProfiles Zinc finger RING-type profile. 47 89 IPR001841 -
Rops3g01526 223 MobiDBLite consensus disorder prediction 194 223 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g01526 Rops-Chr3 23082959 23084444 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops3g01526 10 108 C3H Transcription Factor Family AT2G42360 49.505 2.76e-29 107
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g01526 - - lang:109355198 149.058