LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Rops3g01523	ATGGCACAATTGCCACCAAAGATTCCAAACATGACACCAAGTTGGCCTGAGTTTTCTCCTCACCAAAAAATGCCTTCCCTGAAGAGCATGTCACCAAATGCTGTATCCCAAACAAACCTGAACATCCACCATCATCGTCATGAACACCAAAACCCTTCATGGGTTGATGAGTTCCTAGACTTCTCATCTGCAAGACGTGGGGCCCACCGGAGATCAGTGAGTGACTCCATCACCTTCATGGAGGTGCCACCAACGCTGGATCATTGCCATGGCAAGAATGGTGGTAACAATGAGTTTGAAAAGTTTGATGATGAACAATTCATGTCCATGTTCAGTGATGAGGTTTCGGGGAATCCCATGATGCCACCACATACGTTGTCCTCTTCCAACCCTTCCACTCCTTCTGATCACAACAGCATCAATGATGAGAAAGAAACAAAACAACAAAAGGAGGAGGAGATAAAGCAAGAGGAGCAGCAACAACAACAGCACCAGCAGCAGCAATTGAAGCATGAATCAGATGAGGATGAACGCCAATGCAAACAAGAAAGCACACAAGCTCTCAATGATGATAACAATAATAATGATAATAATAATGCAAATGCAGCAACTTGTTCAAGTGACAGAATCACTGACCCCAAGAGGGTCAAAAGAATCTTGGCAAATAGACAATCTGCGCAAAGATCAAGAGTGAGGAAGCTACAATACATATCAGAGCTTGAGCGAAGTGTGACTTCATTACAGGCTGAAGTTTCAGTACTTTCTCCACGGGTTGCATTTTTGGATCATCATCGGTTGCTTCTAAATGTTGATAACAGTGCTCTCAAGCAAAGAATCGCCGCCCTGGCCCAAGATAAAATTTTTAAAGATGTTAAGACTGCTAACAAAGCTTCAAATAAACATGCAGCTCATCAAGAGGCATTGAAGAGGGAGATAGAGAGGTTGAGGCAAGTGTATCACCAACAAAACATCAAGAAAATGGACAGTGCAACAGTGTCACCATCCCCATCTCCATCACCAAAACCAAGATGTGATACCCAGACTGAAAAGGAACATCTTATCAATGTTTGA	1071	0.4314	MAQLPPKIPNMTPSWPEFSPHQKMPSLKSMSPNAVSQTNLNIHHHRHEHQNPSWVDEFLDFSSARRGAHRRSVSDSITFMEVPPTLDHCHGKNGGNNEFEKFDDEQFMSMFSDEVSGNPMMPPHTLSSSNPSTPSDHNSINDEKETKQQKEEEIKQEEQQQQQHQQQQLKHESDEDERQCKQESTQALNDDNNNNDNNNANAATCSSDRITDPKRVKRILANRQSAQRSRVRKLQYISELERSVTSLQAEVSVLSPRVAFLDHHRLLLNVDNSALKQRIAALAQDKIFKDVKTANKASNKHAAHQEALKREIERLRQVYHQQNIKKMDSATVSPSPSPSPKPRCDTQTEKEHLINV*	357

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Rops3g01523	356	ProSiteProfiles	Basic-leucine zipper (bZIP) domain profile.	212	261	IPR004827	GO:0003700\|GO:0006355
	Rops3g01523	356	ProSitePatterns	Basic-leucine zipper (bZIP) domain signature.	217	232	IPR004827	GO:0003700\|GO:0006355
	Rops3g01523	356	MobiDBLite	consensus disorder prediction	138	159	-	-
	Rops3g01523	356	MobiDBLite	consensus disorder prediction	185	208	-	-
	Rops3g01523	356	MobiDBLite	consensus disorder prediction	323	356	-	-
	Rops3g01523	356	Coils	Coil	137	175	-	-
	Rops3g01523	356	MobiDBLite	consensus disorder prediction	121	137	-	-
	Rops3g01523	356	Pfam	bZIP transcription factor	214	258	IPR004827	GO:0003700\|GO:0006355
	Rops3g01523	356	MobiDBLite	consensus disorder prediction	1	33	-	-
	Rops3g01523	356	MobiDBLite	consensus disorder prediction	168	184	-	-
	Rops3g01523	356	FunFam	Basic leucine zipper 61	213	286	-	-
	Rops3g01523	356	SUPERFAMILY	Leucine zipper domain	214	267	IPR046347	GO:0003700\|GO:0006355
	Rops3g01523	356	CDD	bZIP_plant_RF2	215	265	IPR044759	GO:0003700\|GO:0006355
	Rops3g01523	356	Coils	Coil	305	325	-	-
	Rops3g01523	356	Gene3D	-	213	286	-	-
	Rops3g01523	356	PANTHER	BASIC LEUCINE ZIPPER 34	1	346	-	-
	Rops3g01523	356	MobiDBLite	consensus disorder prediction	15	33	-	-
	Rops3g01523	356	SMART	brlzneu	210	274	IPR004827	GO:0003700\|GO:0006355
	Rops3g01523	356	MobiDBLite	consensus disorder prediction	113	209	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Rops3g01523	Rops-Chr3	23013989	23016204	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Rops3g01523	1	290	bZIP Transcription Factor Family	AT3G58120	56.393	6.93e-96	285

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	bZIP	Rops3g01523		bZIP_2	3.9e-09	CL0018

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Rops3g01523	-		-	lang:109363232	439.113