Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g01521 ATGCATCCAGCATGTGCAGCATGCAAGCATCAAAGGAAGAAATGCAGTGAAAATTGCATATTGGCACCTTACTTTCCATCAAGCAGAAGCCGTGAGTTCCATGCTGTTCACAAGGTTTTTGGTGTTAGCAACATAACCAAATTGGTAAAAAATGCTAAAGAAGAAGATAGAAAAAGAGTAGTAGATTCATTAATATGGGAAGCATGTTGTAGGCAAAGGGACCCAATTCATGGTCCTTATGGAGAGTACACAAAAGTTTACAATGAGTATAAGAAAGTGTTTGATGAACTTAAGATATTGAGAGACCAAAACCAACTATTGCAATTGCCACCTCAAGGATTGAAGTCTGTACAAGATTTGATTGCATGCAATGGTACCAAAGGGAAACACAGAGTAGAAGCAGCTGATAATGCAATGAATTATCTTCATCATGAGAATAAGAATGGTATTATTGATTCTACCATTTATAATGCAATTTGTTCAAATTATTTACAAGATTTTGAGAATATGAGGCCGGAAGTTGTCATCCCATTTCAGCAGCACTCTCAACCATATTATATCACAGGTACCAATCTTTTTTAA 582 0.3608 MHPACAACKHQRKKCSENCILAPYFPSSRSREFHAVHKVFGVSNITKLVKNAKEEDRKRVVDSLIWEACCRQRDPIHGPYGEYTKVYNEYKKVFDELKILRDQNQLLQLPPQGLKSVQDLIACNGTKGKHRVEAADNAMNYLHHENKNGIIDSTIYNAICSNYLQDFENMRPEVVIPFQQHSQPYYITGTNLF* 194
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g01521 193 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 4 109 - -
Rops3g01521 193 Pfam Lateral organ boundaries (LOB) domain 4 100 IPR004883 -
Rops3g01521 193 ProSiteProfiles LOB domain profile. 3 104 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g01521 Rops-Chr3 22956994 22957575 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops3g01521 2 91 AS2 family AT1G06280 60.000 1.57e-38 129
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Rops3g01521 LOB 2.1e-34 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g01521 - - gmx:100809173 324.709