Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g01518 ATGGCAGGTCCTCTTCTTCTTCGTTCTATCTGGTCCTCCACCAGAAAATCCTTTTCCTCTTCTTCTTCCTCTTTCACTCCCTCTTGCTTCCTCTCACGTGCCTTCTCCGCCGCTCCCGCAGCCGCCGCCGATCCCGGCGGATCCCTCGACCCGAGTCGCCTCCGTAACGTGGCAGTGATCGCCCATGTCGACCATGGAAAGACCACTCTCATGGACCGCCTTCTCCGCCAGTGCGGGGCCGACATCCCTCACGAACGCGCCATGGATTCCATCTCCCTCGAACGCGAACGTGGCATCACCATCGCTTCCAAGGTTACGTCTATTTCGTGGAAAGAAAATGAGCTGAACATGGTGGATACTCCTGGACACGCTGATTTTGGTGGTGAGGTGGAACGTGTTGTTGGCATGGTTGAGGGAGCAGTTTTGGTTGTTGATGCTGGTGAAGGTCCACTTGCACAAACAAAATTTGTTCTTGCAAAAGCTTTAAAATATGGGTTGCGGCCTATTCTTCTTTTAAACAAAGTAGACCGACCTTCAGTTACTGAGGAGACATGTGATGAAGTTGAGAGTCTGGTGTTTGATCTATTTGCCAACCTGGGTGCTACAGAGGAGCAACTTGACTTTCCAGTTCTTTATGCTTCTGCTAAAGAGGGATGGGCATCCACCACCTTTACCAAGGATCCTCCTGCTGAGGCCAAAAATATGGCACAGTTGCTTGATGCCATTGTAAAACATGTTCCACCACCAAATGCAAACATTGATGCACCTTTCCAAATGCTGGTTTCAATGATGGAACGAGACTTCTATCTTGGGCGAATTTTGACCGGACGCGTGTATGCTGGGGTTGTTCGTGTTGGTGACAGGGTACATGGACTACGTAATAAGGATTCTGGTGCTGAAAAGATTGAAGATGGAAAGGTGGTGAAACTGATGAAAAAGAAGGGTACAAACATGGTTCTAACTGATTGTGCTGGAGCTGGTGATATAATTTCAGTTGCTGGCTTGGCAAGTCCATCAATAGGCCATACAGTCGCAACTGTGGAGGTTATGTCTGCATTGCCCACAGTTGAATTGGATCCCCCAACAATTTCCATGACTTTTGGTGTAAACGACTCCCCATTAGCTGGCCGTGATGGCACTCATTTGACTGGGGGAAAAATTGGTGACCGACTGATGGCTGAAGCTGAGACCAACCTTGCCATAAATGTGCTTCCAGGCTTATCTGAAACATATGAAGTTCAGGGAAGAGGAGAGCTACAGCTGGGTATTTTAATTGAGAATATGAGACGTGAGGGATTTGAGTTATCTGTCTCTCCACCTAAAGTCATGTATAAAACTGAAAATGGTCAGAAACTTGAGCCCGTAGAAGAAGTTTCAATTGAGGTAAATGATGAGCATGTTGGCTTGGTAATGGAGGCCTTGTCTCATAGACGAGCTGAGGTTACTGACATGGGTCCTGTCTCAGGAACTGTTGGTCGAACTAGATTGTCTTTGACTTGTCCATCAAGAGGCCTGGTTGGTTACAGGAGTGTGTTTAACACTGACACACGTGGAACTGCGTTCATGCATCGTGCTTTCCTTGCATATGAAAAATTTCGAGGCCCTCTCGGCAATGTTAGGAAAGGAGTACTGGTGTCAATGGGTTTTGGTACAATTAAAGCTTATGCATTGATGAGCTTAGAAGCTCGTGGGACACTTTTTGTAACTCCTGGAATGGAGACATATGATGGAATGATTGTTGGAGAACATTCACGGGATACAGATCTTGATGTCAATCCAGTGAGAGCTAAAGAACTTACAAATGTGCGTGCAGCTTCAAAGGATGAGAATGTGAAGCTGTCTCCTCCTCGCCTTATGACGCTTGAAGAAGCTATAGGGTATGTAGCTTCGGATGAGCTTATTGAGGTTACACCAAAGGCCATCCGGTTACGGAAGAAATACCTTGATGTTAACAAGCGTAAAACCATGAGTAGAAAGCCAAAGGAATGA 1989 0.4671 MAGPLLLRSIWSSTRKSFSSSSSSFTPSCFLSRAFSAAPAAAADPGGSLDPSRLRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTSISWKENELNMVDTPGHADFGGEVERVVGMVEGAVLVVDAGEGPLAQTKFVLAKALKYGLRPILLLNKVDRPSVTEETCDEVESLVFDLFANLGATEEQLDFPVLYASAKEGWASTTFTKDPPAEAKNMAQLLDAIVKHVPPPNANIDAPFQMLVSMMERDFYLGRILTGRVYAGVVRVGDRVHGLRNKDSGAEKIEDGKVVKLMKKKGTNMVLTDCAGAGDIISVAGLASPSIGHTVATVEVMSALPTVELDPPTISMTFGVNDSPLAGRDGTHLTGGKIGDRLMAEAETNLAINVLPGLSETYEVQGRGELQLGILIENMRREGFELSVSPPKVMYKTENGQKLEPVEEVSIEVNDEHVGLVMEALSHRRAEVTDMGPVSGTVGRTRLSLTCPSRGLVGYRSVFNTDTRGTAFMHRAFLAYEKFRGPLGNVRKGVLVSMGFGTIKAYALMSLEARGTLFVTPGMETYDGMIVGEHSRDTDLDVNPVRAKELTNVRAASKDENVKLSPPRLMTLEEAIGYVASDELIEVTPKAIRLRKKYLDVNKRKTMSRKPKE* 663
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g01518 662 CDD BipA_TypA_II 257 354 IPR047042 -
Rops3g01518 662 Gene3D - 52 250 IPR027417 -
Rops3g01518 662 FunFam Elongation factor family protein 251 355 - -
Rops3g01518 662 CDD BipA_TypA_C 453 533 IPR035651 -
Rops3g01518 662 CDD TypA_BipA 54 249 IPR047041 -
Rops3g01518 662 FunFam GTP-binding protein TypA 444 538 - -
Rops3g01518 662 Pfam Elongation factor G C-terminus 451 534 IPR000640 -
Rops3g01518 662 PRINTS GTP-binding elongation factor signature 56 69 IPR000795 GO:0003924|GO:0005525
Rops3g01518 662 PRINTS GTP-binding elongation factor signature 168 177 IPR000795 GO:0003924|GO:0005525
Rops3g01518 662 PRINTS GTP-binding elongation factor signature 116 126 IPR000795 GO:0003924|GO:0005525
Rops3g01518 662 PRINTS GTP-binding elongation factor signature 132 143 IPR000795 GO:0003924|GO:0005525
Rops3g01518 662 PRINTS GTP-binding elongation factor signature 96 104 IPR000795 GO:0003924|GO:0005525
Rops3g01518 662 NCBIfam translational GTPase TypA/BipA 54 654 IPR006298 GO:0003924|GO:0005525
Rops3g01518 662 PANTHER TRANSLATION ELONGATION FACTOR-RELATED 51 224 - -
Rops3g01518 662 SUPERFAMILY EF-G C-terminal domain-like 359 442 IPR035647 -
Rops3g01518 662 Gene3D Elongation Factor G (Translational Gtpase), domain 3 362 646 - -
Rops3g01518 662 SUPERFAMILY EF-G C-terminal domain-like 453 569 IPR035647 -
Rops3g01518 662 SUPERFAMILY Translation proteins 199 354 IPR009000 -
Rops3g01518 662 Pfam Elongation factor Tu domain 2 271 344 IPR004161 GO:0005525
Rops3g01518 662 FunFam GTP-binding protein TypA 539 625 - -
Rops3g01518 662 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 52 250 IPR000795 GO:0003924|GO:0005525
Rops3g01518 662 Gene3D - 444 538 - -
Rops3g01518 662 Gene3D bipa protein 539 654 IPR042116 -
Rops3g01518 662 Pfam Elongation factor Tu GTP binding domain 53 247 IPR000795 GO:0003924|GO:0005525
Rops3g01518 662 FunFam GTP-binding protein TypA 53 250 - -
Rops3g01518 662 ProSitePatterns Translational (tr)-type guanine nucleotide-binding (G) domain signature. 89 104 IPR031157 -
Rops3g01518 662 Gene3D Translation factors 251 355 - -
Rops3g01518 662 CDD BipA_III 361 438 IPR047043 -
Rops3g01518 662 FunFam GTP-binding protein TypA 362 470 - -
Rops3g01518 662 NCBIfam small GTP-binding protein domain 55 194 IPR005225 GO:0005525
Rops3g01518 662 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 50 259 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g01518 Rops-Chr3 22829396 22852633 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops3g01518 53 177 Eukaryotic Initiation Factors Gene Family AT3G22980 42.748 1.59e-25 110
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g01518 K06207 - gmx:100789218 1155.2