Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g01508 ATGAATAGCAGTAAACGTGAAGGAGAAGAGATAAAGGAAGCTTTCGATTCAAGCTCAAGGGGTGATAATCCTAGAGACAAATCTGGCAGTCAAGAAGAGAATGTTAGATCAACCAATGTGACTCATAGTGGCATGCCCAAGAGAAGGCGATGGACAGCAGAAGAGGATGCAGTGTTAGATTATTATGTAGACAACCATGGAGAGAGTAATTGGCATGCAATACACATGGAAACAGGACTTGCACGTTGTGGGCCTAGCTGCTGTGACAGATGGCCAAATCACATAAAACCAGGTTTGAAAAGGGGTGAATCATTTACTGAAGAGGAACAGCAAAAAATTATTCATCTCCATGCTAAGCTTGAAAATAGATGGGTTCAAATGGTCCAAGAGGTAATGTAA 399 0.416 MNSSKREGEEIKEAFDSSSRGDNPRDKSGSQEENVRSTNVTHSGMPKRRRWTAEEDAVLDYYVDNHGESNWHAIHMETGLARCGPSCCDRWPNHIKPGLKRGESFTEEEQQKIIHLHAKLENRWVQMVQEVM* 133
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g01508 132 CDD SANT 50 91 IPR001005 -
Rops3g01508 132 Pfam Myb-like DNA-binding domain 51 102 - -
Rops3g01508 132 Gene3D - 44 101 - -
Rops3g01508 132 MobiDBLite consensus disorder prediction 1 32 - -
Rops3g01508 132 SMART sant 47 97 IPR001005 -
Rops3g01508 132 MobiDBLite consensus disorder prediction 1 50 - -
Rops3g01508 132 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 47 99 IPR017930 -
Rops3g01508 132 PANTHER TRANSCRIPTION FACTOR MYB33-RELATED 20 129 - -
Rops3g01508 132 SUPERFAMILY Homeodomain-like 47 129 IPR009057 -
Rops3g01508 132 ProSiteProfiles Myb-like domain profile. 47 95 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g01508 Rops-Chr3 22640518 22641312 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops3g01508 47 131 MYB Transcription Factor Family AT2G32460 51.765 7.47e-26 99.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Rops3g01508 Myb_DNA-bind_6 2.8e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g01508 K09422 - ncol:116263982 109.383