Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g01502 ATGGACCTAAGTTGTGAGGTTCCTACCACAAATCGAGCACGTACTTTAAGTAGCAAAGTCATGGAATCCCACGGTGAAGATCATGTTCCCAAACTGCTTCGAGCTCAAACCCATGTATTCAATCATATTTTGAGTTTCATAAAATCTATGTCCCTTAAATGTGCAATTGACTTGTGCATACCAGATATCATTCACAAGTATGGCCAACCCATGCCACTCTCACAACTCATTGCTTCACTATCAATCCACCCCTCCAAAACCCACTTCATCCACCGCTTGATGCGAATTTTGACTCATTCTGGATTCTTTGCTCAACAGAATGTCACTGAAAATGAGTTAGAAGTGATGTATAAGCTAACTGATGCATCTATGCTACTTCTTAAGGACCATCCCTTGAGTATGACACCTTTTTTGTATTTTGCTCTTGATCCGATTGTCACAAAGCCGTATCATCAGTTTTCCACTTGGTTAAAAAATGAAGATCCTACACCGTTCCACAATGAGTATGGGATGACATTTTGGGATTATGCTGGTCATGACCCCACACTCAATCGCCTTTTCAATGATGCCATGGCAGGTGATACTCAATTGGTTTCATTTGTGATGATTGAGAAGTGCAAGGGAGTGTTTGAGGGATTGAAGTCATTGGTTGATGTTGGAGGAGGAACAGGTTCTTTGACAAAAGCCATTGCTAAATCATTTCCAAAGTTGGAGTGCATTGTATTTGATCTCCCACATGTTGTTGCTGGCTTGCAAGGAACAGAGAACATAAAATATGTTGGAGGGGACATGTTTGAGGCAATTCCTTCTGCTGATTCCATTATGTTGAAGTGGATATTGCATAACTGGAACGATGAGGAATGTGTGAAAATACTGAGTAAATGCAAGGAGGCAATAACTAGCCACGACAAAGATGGGAAGATGATGGTGTATTTAAGTGGAAAACAAAGAAATGAGAAAGAGTGGGCCAACCTGGTTTTCTCTGCTGGTTTTAGCAACTATAAGATAACTCCAGTTCTGGGTTTTAGGTCTCTCATTGAGGTTTATCCATAA 1053 0.4065 MDLSCEVPTTNRARTLSSKVMESHGEDHVPKLLRAQTHVFNHILSFIKSMSLKCAIDLCIPDIIHKYGQPMPLSQLIASLSIHPSKTHFIHRLMRILTHSGFFAQQNVTENELEVMYKLTDASMLLLKDHPLSMTPFLYFALDPIVTKPYHQFSTWLKNEDPTPFHNEYGMTFWDYAGHDPTLNRLFNDAMAGDTQLVSFVMIEKCKGVFEGLKSLVDVGGGTGSLTKAIAKSFPKLECIVFDLPHVVAGLQGTENIKYVGGDMFEAIPSADSIMLKWILHNWNDEECVKILSKCKEAITSHDKDGKMMVYLSGKQRNEKEWANLVFSAGFSNYKITPVLGFRSLIEVYP* 351
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g01502 350 PIRSF O-mtase 304 350 IPR016461 GO:0008168
Rops3g01502 350 PIRSF O-mtase 16 311 IPR016461 GO:0008168
Rops3g01502 350 Gene3D Vaccinia Virus protein VP39 127 350 IPR029063 -
Rops3g01502 350 Pfam Dimerisation domain 50 98 IPR012967 GO:0046983
Rops3g01502 350 Gene3D - 21 126 IPR036388 -
Rops3g01502 350 Pfam O-methyltransferase domain 150 309 IPR001077 GO:0008171
Rops3g01502 350 SUPERFAMILY "Winged helix" DNA-binding domain 31 131 IPR036390 -
Rops3g01502 350 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 131 349 IPR029063 -
Rops3g01502 350 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 40 350 IPR016461 GO:0008168
Rops3g01502 350 FunFam Coniferyl alcohol 9-O-methyltransferase 22 126 - -
Rops3g01502 350 PANTHER O-METHYLTRANSFERASE 33 335 IPR016461 GO:0008168
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g01502 Rops-Chr3 22539451 22541790 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops3g01502 50 337 Monolignol Biosynthesis Gene Families AT5G54160 31.546 4.00e-49 167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g01502 - K16040 gmx:100807238 493.041