Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g01501 ATGGTGCTGTGCATTTCTATGCAGCAGACGTTGATGGAAGATGAACCAGAGAAGTACCAGTCCCACTTTAGTGAATATATCAAGCGAGGAATAGAGGCTGATGGACTTGAGGAGCTGTACAAGAAGGTTCATGCTGCCATTCGTGCAGATCCCACCATCAAGAAATCTGAGAAGCAGCCACCAAAGGAACATAAGAGGCTTGCGTTGCCTGGAAATGGAGCCAAACCCACTGAAGCAGAAGGAGTAAGGAAGAGAGGATTCTCTGAAACTGAGATTGAAACAACAACCACTATGGATTTGATGCTTAACCTCTCCCCAAAGGAAGGAGCTACTGCTGCTGGTGCAGAAATAGGCAGTTGTAATTGGGTTCTGAATGGTATTCACATGGCTGATAACATTGCTGCAAGAACATTTCTGTGA 420 0.4548 MVLCISMQQTLMEDEPEKYQSHFSEYIKRGIEADGLEELYKKVHAAIRADPTIKKSEKQPPKEHKRLALPGNGAKPTEAEGVRKRGFSETEIETTTTMDLMLNLSPKEGATAAGAEIGSCNWVLNGIHMADNIAARTFL* 140
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g01501 139 MobiDBLite consensus disorder prediction 51 69 - -
Rops3g01501 139 MobiDBLite consensus disorder prediction 51 90 - -
Rops3g01501 139 PANTHER RIBOSOMAL PROTEIN L5-RELATED 8 70 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Rops3g01501 139 Pfam Ribosomal L18 C-terminal region 36 67 IPR025607 -
Rops3g01501 139 Gene3D - 5 91 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g01501 Rops-Chr3 22485793 22487773 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops3g01501 6 69 Cytoplasmic Ribosomal Protein Gene Family AT5G39740 64.062 1.29e-22 88.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g01501 K02932 - nnu:104598220 115.546