Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g01500 ATGACTGGTCCTGGTTCTCCTTGTGGAGCCTGTAAATTCTTGCGAAGGAAGTGTGTGAGAGGTTGTGTTTTTGCACCTTATTTTTGTCATGATCAACTATATACCCATTTTCCAGCCATTCATAAGGTCTTTGGTGCAAGCAATGTCTCAAAGCTCCTTGCCCATCTCCCTGTGAGTGATCGTTATGAAGCTGCACTTACTATCTCATATGAAGCTCAAGCTAGACTTCAGGATCCAATTTATGGCTGTGTTGCCCATATTTTTGCACTCCAACAACAGGTGGTCAATTTACAAGCACAGCTAGTTTATCTCAGGGAACAAGCAGCTCAGAGATGTTTTAATGCCTCAGCTGCTGAAAACCCTAATGAGAATATTATGGGTCCTCAATTTTTTTCACCAAACTTGATCACTAATCCCTCAACATTACAATATTATGGGAATATTACTCCCATGGACCCAAACCCTATTGGAAATTATGAAAATTCAGGAACCATGGAAGAGAGCATCTCATTTTCTAGATTTGAAGAGAGTTGTGACATGCAAAGACAGTGGTCCTTTCATGAAGTGTATAACCTTCATGTGGTGATTGAGAAGTGCAAGGGTGTGTTTGAGGGATTGAAGTCATTGGTTGATGTTGGTGGAGGCACAGGGATTGTATTAGATCATTCCCATGTTGTTGCTGGCTTGCATGGAAGTGAAAACTTAAAATATGTTGGTGGGAACATGCTTGAAGAAATTCCTCCGGCTGATGCTGTTTTGTTGAAGAAATGCAAGGCAACAATTACTAACAAAGGCAAAGAAGGAAAGGTGGTTATCATAGACATGGTGATGGAGAACAAGAAGGGAGATGATGAATTTGTGGAAACACAGCTCTTCTTTGACATGCTGATGATGGTGTATGCCTCAGGAAAGAAGAGAAATGGGAAACAATGGGCCAAGTTGTTTTCCTTAGTTGGTTTCAATGACTACAAGATAACTCTAATTCTGGGTTTAAGGTCACACATTGAGGTTTATCCATAG 1020 0.4069 MTGPGSPCGACKFLRRKCVRGCVFAPYFCHDQLYTHFPAIHKVFGASNVSKLLAHLPVSDRYEAALTISYEAQARLQDPIYGCVAHIFALQQQVVNLQAQLVYLREQAAQRCFNASAAENPNENIMGPQFFSPNLITNPSTLQYYGNITPMDPNPIGNYENSGTMEESISFSRFEESCDMQRQWSFHEVYNLHVVIEKCKGVFEGLKSLVDVGGGTGIVLDHSHVVAGLHGSENLKYVGGNMLEEIPPADAVLLKKCKATITNKGKEGKVVIIDMVMENKKGDDEFVETQLFFDMLMMVYASGKKRNGKQWAKLFSLVGFNDYKITLILGLRSHIEVYP* 340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g01500 339 Coils Coil 87 107 - -
Rops3g01500 339 ProSiteProfiles LOB domain profile. 6 108 IPR004883 -
Rops3g01500 339 Pfam Lateral organ boundaries (LOB) domain 7 104 IPR004883 -
Rops3g01500 339 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 181 337 IPR029063 -
Rops3g01500 339 PANTHER LOB DOMAIN CONTAINING PROTEIN 1 121 - -
Rops3g01500 339 Pfam O-methyltransferase domain 232 321 IPR001077 GO:0008171
Rops3g01500 339 Gene3D Vaccinia Virus protein VP39 158 339 IPR029063 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g01500 Rops-Chr3 22471313 22485100 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops3g01500 7 122 AS2 family AT3G58190 77.119 1.88e-61 194
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Rops3g01500 Methyltransf_2 3e-09 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g01500 K13945 K13944 gmx:100816960 280.026