Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g01493 ATGACTGGTCCTGGTTCTCCTTGTGGAGCCTGTAAATTCTTGCGAAGGAAGTGTGTGAGAGGTTGTGTTTTTGCACCTTATTTTTGTCATGATCAACTATATACCCATTTTCCAGCCATTCATAAGGTCTTTGGTGCAAGCAATGTCTCAAAGCTCCTTGCCCATCTCCCTGTGAGTGATCGTTATGAAGCTGCACTTACTATCTCATATGAAGCTCAAGCTAGACTTCAGGATCCAATTTATGGCTGTGTTGCCCATATTTTTGCACTCCAACAACAGGTGGTCAATTTACAAGCACAACTAGTTTATCTCAGGGAACAAGCAGCTCAGAGATGTTTTAATGCCTCAGCTGCTGAAAACCCTAATGAGAATATTATGGGTCCTCAATTTTTTTCACCAAACTTGATCACTAATCCCTCAACATTACAATATTATGGGAATATTACTCCCATGGACCCAAACCCTATTGGAAATTATGAAAATTCAGGAACCATGGAAGAGAGCATCTCATTTTCTAGATTTGAAGAGAGTTGTGACATGCAAAGACAGTGGTCCTTTCATGAAGTGTATAACCTTCATGTGGTGATTGAGAAGTGCAAGGGTGTGTTTGAGGGATTGAAGTCATTGGTTGATGTTGGTGGAGGCACAGGGATTGTGGCAAAAGCCATTGCAAAATCATTCCCTCAGCTCCAATGCGTTGTATTAGATCTTCCACATGTTGTTGCTGGCTTGCATGGAAGTGAAAACTTAAAATATGTTGGTGGGAACATGCTTGAAGAAATTCCTCCACGGTGA 795 0.4138 MTGPGSPCGACKFLRRKCVRGCVFAPYFCHDQLYTHFPAIHKVFGASNVSKLLAHLPVSDRYEAALTISYEAQARLQDPIYGCVAHIFALQQQVVNLQAQLVYLREQAAQRCFNASAAENPNENIMGPQFFSPNLITNPSTLQYYGNITPMDPNPIGNYENSGTMEESISFSRFEESCDMQRQWSFHEVYNLHVVIEKCKGVFEGLKSLVDVGGGTGIVAKAIAKSFPQLQCVVLDLPHVVAGLHGSENLKYVGGNMLEEIPPR* 265
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g01493 264 Coils Coil 87 107 - -
Rops3g01493 264 ProSiteProfiles LOB domain profile. 6 108 IPR004883 -
Rops3g01493 264 Pfam O-methyltransferase domain 191 262 IPR001077 GO:0008171
Rops3g01493 264 Gene3D Vaccinia Virus protein VP39 164 264 IPR029063 -
Rops3g01493 264 PANTHER LOB DOMAIN CONTAINING PROTEIN 1 122 - -
Rops3g01493 264 Pfam Lateral organ boundaries (LOB) domain 7 104 IPR004883 -
Rops3g01493 264 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 181 262 IPR029063 -
Rops3g01493 264 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 203 264 IPR016461 GO:0008168
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g01493 Rops-Chr3 22354233 22358467 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops3g01493 7 122 AS2 family AT3G58190 77.119 6.23e-62 192
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Rops3g01493 Methyltransf_2 7.1e-15 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g01493 K13945 K13944 gmx:100816960 280.026