Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g01488 ATGAAACAACAGTATCAACAGAGGGGTAGCAAAGAGCAAAGGAATATAGCACAGTGGCGTGAACTTCAGGATGATGGAGTGGAATTGTCGAGCCAAGCAAAAGGAATAACTTTGCAACAAAGGAATATATTAAATGTGGGCAGCCTTCTCGAAAACCACATGGGTGTCGAAAGTGCTGGGGAAGACAAACTCGTTAGTGGACCCGACATTAGTGGACTACGACCATATTATAACAATAAGTTAGGGGAAGATCTCCAGGAGGCAAGTAATTCAACGGAGGAGATTTTGAGTAAGGATGAAGACTTATCACCGGGCTTGGAGCCTTGTGGGCCGAAACAAGGGATGTTTTGTGGGGTCTATGAGGGGTCTGTTTATCCAAATAATTTTGAAGGGGCTGGACTTGTCTTAAACCGGGGCAATTTAGATGATGGACCCTCCAGCTTTCAGAAGCTTGTAACGTTGGGCCTTCCGTCTAATGTAAATTTTCTGGCCCAACCAGCTTCGGTCAACAGGCAACAAGACGCAGTGGTGGGCAGAACAATAGACCAAATTGCAAGTCATTCGTGGGTCTCTGAAGAGGTACGGAAACCAAGCTTGGGAGGGTCTCGCAAGCATATTTCCTTTTCTTGCCCTAACCAGTTTCAGAGAAAATTACTCATGAAGGAGGTGAGGGGGCCATCACAAGGCAAGGTTTCGTGTGATCCTGGGGACGATTCCAAAAAGCTCAAGAAGCAAAGCTCCAAATACAAAAGAGTAAGGAAAATCCAGCTTCAAAAAACGCGACAAAGTGTCCGTATGAAGAAACAAAGGGAGAATGATGCCAATGGTTGCGAGATTCAGAATTTAAAGAGCGGTAGCAAAATTATGGAATTCCACGGTGAAGACCATGCTGCCAAACTGCTTCAAGCGCAAACTCATGTATTCAATCACTTTTTAAGCTTCATAAAACCCATGTCCCTGAAATGTGCAATTGATTTATGCATACCTGATATCATACATAACTATGGCCAACCCATGCCACTTTCACAACTCATTGCTTCACTACCAATCCACCCCTCCAAAACTGGAAACATCTCTCGCTTGATGCGAATTCTGACCCATTCAGGCTTCTTCTCTCAGCAGAATGTTACTGAAAATGAGCTAGAAGAAGTGAGATATGTGCTAACTGATGCATCTAAGCTACTTCTTAAGGACCATCCCTTGTGTATGACATCCTTATTGCATGTCATCCATGATCCAATTTTGACTAAGCCATGGTATCAATTCTCTACTTGGTTCAAAAATGATGACCCTACACCGTTTCATACAGAAAATGGGATGGGATTTTGA 1329 0.4357 MKQQYQQRGSKEQRNIAQWRELQDDGVELSSQAKGITLQQRNILNVGSLLENHMGVESAGEDKLVSGPDISGLRPYYNNKLGEDLQEASNSTEEILSKDEDLSPGLEPCGPKQGMFCGVYEGSVYPNNFEGAGLVLNRGNLDDGPSSFQKLVTLGLPSNVNFLAQPASVNRQQDAVVGRTIDQIASHSWVSEEVRKPSLGGSRKHISFSCPNQFQRKLLMKEVRGPSQGKVSCDPGDDSKKLKKQSSKYKRVRKIQLQKTRQSVRMKKQRENDANGCEIQNLKSGSKIMEFHGEDHAAKLLQAQTHVFNHFLSFIKPMSLKCAIDLCIPDIIHNYGQPMPLSQLIASLPIHPSKTGNISRLMRILTHSGFFSQQNVTENELEEVRYVLTDASKLLLKDHPLCMTSLLHVIHDPILTKPWYQFSTWFKNDDPTPFHTENGMGF* 443
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g01488 442 PANTHER O-METHYLTRANSFERASE 299 438 IPR016461 GO:0008168
Rops3g01488 442 MobiDBLite consensus disorder prediction 245 263 - -
Rops3g01488 442 Gene3D - 291 395 IPR036388 -
Rops3g01488 442 SUPERFAMILY "Winged helix" DNA-binding domain 298 400 IPR036390 -
Rops3g01488 442 FunFam Coniferyl alcohol 9-O-methyltransferase 290 395 - -
Rops3g01488 442 Pfam Dimerisation domain 318 366 IPR012967 GO:0046983
Rops3g01488 442 MobiDBLite consensus disorder prediction 225 273 - -
Rops3g01488 442 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 308 442 IPR016461 GO:0008168
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g01488 Rops-Chr3 22232249 22238878 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops3g01488 317 439 Monolignol Biosynthesis Gene Families AT3G53140 32.824 2.23e-07 50.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g01488 - - gmx:100793263 233.032