Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g01484 ATGAACAACAGCTACAGAAGCCGTTGCATTGTCATCCACTTTGTAATTGGAAACAGTGCTACATCAAAAGTGTCTTGGACAGAGCTATTAAAGCAGAGGACAGAAAGCATGGAGATTTCTTCAAAATATCGTCCACATGGGGTATATGAGGATGCATGTGCTATATTAGTGATTCATGGTACTGCACATCAGGTGCTGCCGGCAGAACTTGAAGGACTTCTTATGAGCCATCCTTCCATTGCAGATGCAACTGTTTTCTCGCAAAAGGATGATGCTGCGGGTGAAGTTCCAATTGCTTTTGTGGTATGCTTTGATCTTACTGAAGAGGCTGTAAAGGATTTTAAATATGGAGTTGCATCACCCAGTAGTGGAGGTCAAGTAAACAACAAGAAGTCCAAAGCATCGTCAAACCCTAGATGGTGGAGGGTAGTGCTCAAAATTAGTGCTCACTTTGATTTCTTTGTCTTCTCTATGATGCAAGATGCTAGTAATACAAACCGTACACTTGATCTTGCCTTTGCACTTGAGGTTGGAACAATAGCAAACAAAGCAGTTGGTGAAAATTCAAGTCATTCTGGGAGCACAAAATCTGTGATGACCATTCTCAATTCTTAA 615 0.413 MNNSYRSRCIVIHFVIGNSATSKVSWTELLKQRTESMEISSKYRPHGVYEDACAILVIHGTAHQVLPAELEGLLMSHPSIADATVFSQKDDAAGEVPIAFVVCFDLTEEAVKDFKYGVASPSSGGQVNNKKSKASSNPRWWRVVLKISAHFDFFVFSMMQDASNTNRTLDLAFALEVGTIANKAVGENSSHSGSTKSVMTILNS* 205
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g01484 204 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 61 115 - -
Rops3g01484 204 Pfam AMP-binding enzyme C-terminal domain 69 111 IPR025110 -
Rops3g01484 204 Gene3D - 58 150 IPR045851 -
Rops3g01484 204 SUPERFAMILY Acetyl-CoA synthetase-like 63 109 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g01484 Rops-Chr3 22175274 22177784 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops3g01484 57 114 Monolignol Biosynthesis Gene Families AT4G05160 52.459 2.58e-11 60.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g01484 K01904 - gmx:100790396 84.3445