Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g01474 ATGCAGATTGACTGCCTTTGTTGGCTACAAGGCTGGGAAACTCACATTGTTAGAGAGGTTGAGAAGCCGAGATCAAAGCTTCATAAGAAAGAGACATGTGAGGCTGTTACTACCATTGAAGCTCCACCATTGGTAGTTGTTGGAGTGGTGAGTTATGTGAAGACACCTCGTGGCCTTCACACTCTGGATACCTATCTGAAACTTCCACATAAGCATTACAATACTGGCTGGGTTCTTTCCCAGGTTGGAAAAGTGTACTTTGAATTAGTTGATTATTTAGAAGCTGATCAGGCCTTTGGTCTTGCTCGTCACATTACGCCTTATAGTTTGGAAGGAATGGATGTATACTCAACAATCCTTTATCATCTAAAAGAAGTTATGAAGTTAAGTTACCTGGCTCAGGAACTGATATCAACTGACCGCTTAGCTCCTCAATCTTGGTGTGCCATGGGAAATTGCTACAGCCTGCAGAAAGATCATGAAACTGCACTGAAGAATTTTCAGCGAGCTGTTCAACTAAATCCTAGATTTACATATGCACACACCCTTTGTGGACATGAGTATGTTGCACTGGAAGATTTTGAGAATGGAATCAAATGCTACCAAAGTGCACTCCGGGTTGATGCAAGGCACTACAATGCCTGGTATGGACTTGGAATGGTATATCTTCGCCAAGAGAAGTTTGAGTTCTCTGAACATCATTTCCGGATGGCTTTCCAAATCAATCCACGCTCATCTGTTATAATGTCATACCTTGGCACTGCTTTGCATGCTTTAAAGAGAAGTGAGGAAGCGCTGTTGGTGATGGAGAAGGTTATTTTGGCAGATAAGAAAAATCCTCTTCCGATGTATCAGAAGGCCAATATACTTATGAACTTGGAAAAATTTGACGAGGCTTTGGAAGTCCTAGAAGAGCTTAAAGAGTATGCTCCCCGTGAAAGCAATGTCTATGCTTTAATGGGCAAGATATATAAAAGGCATAACATGCATGAGAGAACAATGCTTCATTATGGTGATCTCGAAAGCATCAGAGCATGGGTTCAAAGGAGGAAGGCATGGGAACAGCACGTGTACTCCTTTATTGGAAGGTGGTTTCGAATTTTCGAGATACCAAGAAACTGGTCGGGTCTGGAGAGAGGGTGTGAGTGCTATAAGAAGGAGGGGGGACTTCAACAAAAGGAGGTTTTTTTGGCTGGGAAGAAAAGAAAAAGGAGGACCAGAAGGAAAAAAGGAAGAAAGCCAGAAAAGGCTGAGAGGTGA 1260 0.4262 MQIDCLCWLQGWETHIVREVEKPRSKLHKKETCEAVTTIEAPPLVVVGVVSYVKTPRGLHTLDTYLKLPHKHYNTGWVLSQVGKVYFELVDYLEADQAFGLARHITPYSLEGMDVYSTILYHLKEVMKLSYLAQELISTDRLAPQSWCAMGNCYSLQKDHETALKNFQRAVQLNPRFTYAHTLCGHEYVALEDFENGIKCYQSALRVDARHYNAWYGLGMVYLRQEKFEFSEHHFRMAFQINPRSSVIMSYLGTALHALKRSEEALLVMEKVILADKKNPLPMYQKANILMNLEKFDEALEVLEELKEYAPRESNVYALMGKIYKRHNMHERTMLHYGDLESIRAWVQRRKAWEQHVYSFIGRWFRIFEIPRNWSGLERGCECYKKEGGLQQKEVFLAGKKRKRRTRRKKGRKPEKAER* 420
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g01474 419 SMART tpr_5 212 245 IPR019734 GO:0005515
Rops3g01474 419 SMART tpr_5 280 313 IPR019734 GO:0005515
Rops3g01474 419 SMART tpr_5 76 109 IPR019734 GO:0005515
Rops3g01474 419 SMART tpr_5 144 177 IPR019734 GO:0005515
Rops3g01474 419 SMART tpr_5 178 211 IPR019734 GO:0005515
Rops3g01474 419 SMART tpr_5 246 279 IPR019734 GO:0005515
Rops3g01474 419 Coils Coil 286 306 - -
Rops3g01474 419 Gene3D Translation factors 14 42 - -
Rops3g01474 419 SUPERFAMILY TPR-like 132 337 IPR011990 GO:0005515
Rops3g01474 419 ProSiteProfiles TPR repeat profile. 178 211 IPR019734 GO:0005515
Rops3g01474 419 FunFam Cell division cycle protein 27 homolog B 109 241 - -
Rops3g01474 419 SUPERFAMILY Translation proteins 14 74 IPR009000 -
Rops3g01474 419 PANTHER CELL DIVISION CYCLE 16,23,27 61 343 - -
Rops3g01474 419 Pfam Tetratricopeptide repeat 185 228 - -
Rops3g01474 419 Gene3D Tetratricopeptide repeat domain 109 236 IPR011990 GO:0005515
Rops3g01474 419 Pfam Tetratricopeptide repeat 145 177 IPR001440 GO:0005515
Rops3g01474 419 ProSiteProfiles TPR repeat profile. 212 245 IPR019734 GO:0005515
Rops3g01474 419 Gene3D - 43 65 - -
Rops3g01474 419 Pfam Ribosomal protein L3 14 64 IPR000597 GO:0003735|GO:0005840|GO:0006412
Rops3g01474 419 MobiDBLite consensus disorder prediction 399 419 - -
Rops3g01474 419 ProSiteProfiles TPR repeat profile. 144 177 IPR019734 GO:0005515
Rops3g01474 419 Gene3D Tetratricopeptide repeat domain 237 364 IPR011990 GO:0005515
Rops3g01474 419 Pfam Tetratricopeptide repeat 260 323 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g01474 Rops-Chr3 21981442 21983476 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops3g01474 14 64 Cytoplasmic Ribosomal Protein Gene Family AT1G43170 82.353 1.36e-13 70.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g01474 K03350 - gmx:100802544 538.495