Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g01470 ATGCTAAAAAAGATGGATGAAGGAGAAATCACAAATGGTTTCCTTCAGAACCCAACTTCTGCATCTAATAATCCTCCTCCTGTTTTGAAGAGGAAAAGAAACCTCCCAGGAAACCCAGATCCTGAAGCTGAAGTAATAGCTTTATCTCCAAAGACTCTCATGGCAACAAACAGATTCTTGTGTGAAACATGTGGGAAGGGTTTCCAAAGGGATCAAAATCTTCAACTCCATAAACGTGGACACAACCTTCCTTGGAAGCTGAAGCAAAGGGCTAACAAAGAAGCAAGGAAGAGAGTTTATGTCTGTCCAGAGAAGACTTGTGTTCACCATGATCCTTCTAGGGCTCTAGGGGATTTAACTGGGATAAAAAAGCACTTTTGCAGAAAGCACGGTGAAAAGAAGTGGAAGTGTGAGAAGTGCTCAAAACGTTATGCTGTGCAGTCAGACTGGAAAGCACACTCAAAAACCTGTGGCACCAGAGAATACAAATGTGATTGTGGAACTATATTTTCACGGAGAGATAGCTTCATCACTCATAGGGCCTTCTGTGATGCCTTGGCAGAAGAAACAGCTAGGGTAAATGCAGCATCAAACAACTCATTAGGGGGTAACATTGGTTACAATGTAATGGGAACATCCCTAGGCCCTAACATGCCAACCCATTTTTCTTCAATTTTCAAGCCAATTTCAAGCACTGACGAAACAAGCAATAATCAAACATCTAGGGGCCTATCCCTCTGGATGGGTCAAGCATCTCAGGCTCATGAAACAATGACCAATAATGGCAATTTACATGAGATTCATCAACTTGGTTCTGTCACAAACTCAGCAGGAGTAATATATGGTGGGAACCCACTTGTCCAATGCTCAAATCCTCCACATTCTAATAATTATCAGCTAAATTGGGTGTTTGGAACTAAAGTTTCCTCCAATGGAAGACAAGAACTTACTAGCACTACTACTTCACTTCCACTAGGGAATATTGTTAACGATGTTTCAAGCCAACAAACAAGTGTTCCTTCCTTGTATAGTTCCCAACACCAATCAAATCAAATATCTTCAGCAAACATGTCAGCCACAGCTTTGTTGCAAAAAGCTGCTCAAATTGGAGCAACCTCAACTGACCCATCATTCTTGGGGAGCTTAGGTTTGAAATGCAGTAACAATCAAATGCAAGATGGGAACAAGTTTAGTGTTATGTATGGTTCAAGTTCAATACTCACTAGTCTTGGGAGTGAGGCTGAGAACCCTGCATGTGATTTGTCACAAATGCACCCTGCCAAACGCAGACACATGCAGAATGAAGAGAGTGGAGGGGGGCAAACTAGGGATTTTCTTGGTGTTGGTGTGCAAACCATTTGCCACCCTTCATCAATCAACGGATGGATTTGA 1392 0.421 MLKKMDEGEITNGFLQNPTSASNNPPPVLKRKRNLPGNPDPEAEVIALSPKTLMATNRFLCETCGKGFQRDQNLQLHKRGHNLPWKLKQRANKEARKRVYVCPEKTCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCEKCSKRYAVQSDWKAHSKTCGTREYKCDCGTIFSRRDSFITHRAFCDALAEETARVNAASNNSLGGNIGYNVMGTSLGPNMPTHFSSIFKPISSTDETSNNQTSRGLSLWMGQASQAHETMTNNGNLHEIHQLGSVTNSAGVIYGGNPLVQCSNPPHSNNYQLNWVFGTKVSSNGRQELTSTTTSLPLGNIVNDVSSQQTSVPSLYSSQHQSNQISSANMSATALLQKAAQIGATSTDPSFLGSLGLKCSNNQMQDGNKFSVMYGSSSILTSLGSEAENPACDLSQMHPAKRRHMQNEESGGGQTRDFLGVGVQTICHPSSINGWI* 464
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g01470 463 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 23 451 IPR031140 -
Rops3g01470 463 Gene3D Classic Zinc Finger 38 112 - -
Rops3g01470 463 ProSiteProfiles Zinc finger C2H2 type domain profile. 59 81 IPR013087 -
Rops3g01470 463 FunFam protein indeterminate-domain 5, chloroplastic-like 113 192 - -
Rops3g01470 463 SUPERFAMILY beta-beta-alpha zinc fingers 58 155 IPR036236 -
Rops3g01470 463 ProSitePatterns Zinc finger C2H2 type domain signature. 61 81 IPR013087 -
Rops3g01470 463 Gene3D Classic Zinc Finger 128 195 - -
Rops3g01470 463 FunFam protein indeterminate-domain 12-like 38 106 - -
Rops3g01470 463 MobiDBLite consensus disorder prediction 1 41 - -
Rops3g01470 463 MobiDBLite consensus disorder prediction 12 27 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g01470 Rops-Chr3 21876086 21878491 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops3g01470 26 463 IDZ Gene Family AT1G03840 53.908 1.47e-150 436
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Rops3g01470 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g01470 K25870 - gmx:100790620 692.189